Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1590 89.7 4e-13 >seq1590 Length=53781 Score = 89.7 bits (98), Expect = 4e-13 Identities = 125/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 101680 AAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAA-ACTCTC 101738 ||||||||||| ||||| | ||||| || |||||||| ||| ||| ||| |||| | Sbjct 23970 AAGAGCATCAACATGATCCAGATAGACATGCGCATCTCCCATAACATGCGTAAGACTC-C 23912 Query 101739 CAGGCACTAGATTAGTGACATGAGCAATC--ATGCAAGTTAAAAGAGAATAGCTAGCAAT 101796 |||| | |||| | |||||||| ||| ||| || | || | |||||| || || Sbjct 23911 CAGGAATCAGATCACAAACATGAGCGATCATATGGCAG--AGGAGCGCATAGCTGGCGAT 23854 Query 101797 GTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACA 101847 ||| ||||| || || | |||||||||| |||| ||||| | |||||| Sbjct 23853 GTTGAATGGTACGCCAAGCCCCATATCACACGATCGCTGATATAATTGACA 23803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361234139347625