Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq68 237 2e-57 seq485 109 7e-19 >seq68 Length=8748 Score = 237 bits (262), Expect = 2e-57 Identities = 1299/2056 (63%), Gaps = 31/2056 (2%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||||||||| || |||||||| | | ||||| || ||||||||||| || || ||| Sbjct 2382 GTGAATTGAATCGGTGCGGATGCAGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 2441 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || || |||| ||| ||||||||| || | ||| | || ||| ||| Sbjct 2442 CCTAGTTTCCAACCGGCAAAATGCATGGACGTAATCTTGCCCATGGTGGGGTCTTTCATA 2501 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || || ||||| ||||| ||||| | ||| || || | ||| || ||||||| | Sbjct 2502 TGAATGTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGCGGCCATTTGAACA 2561 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| | Sbjct 2562 ATTGTTCGTTGGGAAATCTCCCACACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 2621 Query 53048 TTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 || | | ||||| || || || || || | || || | ||||| || | || | Sbjct 2622 TTGGGGATGTTCTGGATTGAACCGCCGTCAGCAATGATGCGGTTCTTCATGTTGTCTGAC 2681 Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164 || ||| | ||| | | | | || || || ||||| ||||| ||||| || Sbjct 2682 CACAATCCCATGTCGACAAGATCCTTGAGAAGCCATGGGTTAACGACTTGGAATTCCCCT 2741 Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224 | || || | |||| ||| || ||| || || ||||| | | |||||||| || Sbjct 2742 GCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACACTCATTAAAACCG 2801 Query 53225 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 53284 | ||| |||| || || || |||||||| || || | ||||| || | | |||| Sbjct 2802 AGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACTGTTGCGGACACCG 2861 Query 53285 TATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNNN 53343 ||| | |||| || | || || | ||||| | |||||| || | ||| || Sbjct 2862 TATTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTGACTCC 2920 Query 53344 NNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGG 53403 ||| || || || | | || ||| | || || || || | Sbjct 2921 CCACATATCGTATTGAAGTTCGCCTTTTGAGACAGGTGAGCCTTCGTAAGTCTCATAGGT 2980 Query 53404 TCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAA 53463 || || || ||| | ||| | | | |||||| ||| ||||| || ||||| Sbjct 2981 ACCCAGCTCCTTAGCAATCTCAACAGAAGACGTCAATGCAGCGTGGTAAATAGTCTCGAA 3040 Query 53464 GATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAGAG--AAT 53520 ||| | || || | | ||||| ||| | |||||||| ||| ||||| || Sbjct 3041 GATTTGAACGTTGAGGTGCTTAGCTTC-AGGTGACTCAAATGG-TAAACGAAGAGCCAAG 3098 Query 53521 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 53580 ||| || || || | ||||| ||||| | | ||||||| | || | ||| | | Sbjct 3099 AAA-GCATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGTGACGGAAATT-GCTCT 3156 Query 53581 TTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAA 53639 ||| | ||||| | | || || || || || || || || || || | ||| ||||||| Sbjct 3157 TTCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTCCTGACAA 3216 Query 53640 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATTA----CAAAC 53695 |||| || || | || || | || || | ||| || | | || | Sbjct 3217 CGACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTCCCTCGTTCATGTCCACAA 3276 Query 53696 ATGTTC--AATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 53753 ||||| | ||||| |||||||| ||||| || || |||| | | | |||| Sbjct 3277 ATGTTGGGAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCATCTGGTGCAGAGTATT 3336 Query 53754 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 53813 | || || ||||| ||||| | ||||| || | || | ||| || |||| Sbjct 3337 CGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCT 3396 Query 53814 TTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTA 53873 | || || || |||||||| ||||| |||||||| | || || || | || | || | Sbjct 3397 TCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGA 3456 Query 53874 TAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGT-ATCTCTTTTCTCTTTCG 53932 ||| | | ||| | | || || || | |||| | |||| || ||| Sbjct 3457 GAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---TTTGCGACCTCTACCTTCCTTCT 3513 Query 53933 TATAG-TGT-ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATT 53990 ||| | | ||| | ||| || || || || | |||| |||| ||||| |||| Sbjct 3514 CATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCAACCCAGGGCATT 3573 Query 53991 CATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAG 54050 | | |||||||||| | ||| ||||||| | | || || |||||||||||||| | Sbjct 3574 CGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCG 3633 Query 54051 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 54110 ||||||| | ||| || ||||| | || | ||| || || || |||||| Sbjct 3634 GAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTC 3693 Query 54111 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTC 54170 || || || ||| | | || || | ||||| || || | ||| || | | | | Sbjct 3694 GGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCAC 3753 Query 54171 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 54230 |||| || |||||||| ||||| || | ||||| || || || || |||||| | || Sbjct 3754 CAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCA 3813 Query 54231 TTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAA 54290 | || | |||||||||||| ||||||||| |||| || ||| ||| | ||||| | Sbjct 3814 TAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGA 3873 Query 54291 TATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTT 54349 | | ||| ||||| || || || || |||| || || | || || ||| || Sbjct 3874 TTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACA-CGTCTTG 3932 Query 54350 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 54409 | ||||| || || || || |||||||| ||| |||||| || || || || || Sbjct 3933 AGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAA 3992 Query 54410 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 54469 | ||| | || || || || | ||||| || ||||| || || |||| Sbjct 3993 AGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTATTTA 4052 Query 54470 TCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTAC 54528 | || | | ||||| ||||| || || || ||||| || | ||||| || || Sbjct 4053 TTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCG-TGAATACCAAC 4111 Query 54529 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAA 54588 || |||||||| | ||| || || || | ||| | | ||| | | | || | Sbjct 4112 GGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTTCCATCGAGTCGAAGAAG 4171 Query 54589 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 54648 ||| ||| || | || || || || || || | ||| |||||||| ||||| | Sbjct 4172 GTATGATCGCTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGAC 4231 Query 54649 AATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAA 54707 || | |||||||| | | | || | |||| ||| | | | ||| | Sbjct 4232 GATTGCGGAGTTGAGCTCTGCTTCATGCCTCATAAC-GCATTCGTATGTCTCCTTACTGA 4290 Query 54708 TAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTT 54767 | || |||||| | | |||| | || |||||||||| | |||| || | || || | Sbjct 4291 TCATAGGAGAAGGATGGTTATTTCTTGGGTTGACATAGTGATATAAGTCGCTGATGACGT 4350 Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 ||| | || || |||| |||||| || || ||||| || || | ||| || || | Sbjct 4351 GGGAGAATTGCTTCTTGGTTTGTTTGTGGAGGTTGGATACTGCAATACGAGCAGCGAGGA 4410 Query 54828 TGGCATAATCCGGATG 54843 |||||||||| || || Sbjct 4411 TGGCATAATCGGGGTG 4426 >seq485 Length=41282 Score = 109 bits (120), Expect = 7e-19 Identities = 298/452 (66%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 |||||| || || ||||| ||||| || | || ||||| || || || || ||| | Sbjct 7464 CATAACACCAGCCTTCTGGTAGTCACCGACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 7405 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCC 23950 || || || || |||||||| ||| | || |||| | || || | ||| | | | Sbjct 7404 TAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGCAGATTTGTACAC-CTTGTCGTTAC 7346 Query 23951 CAATT-CAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAAT 24009 ||| || | | | |||||||| ||||| || ||| ||||||| | | | Sbjct 7345 CAAGAGCAACGAGGAGACGGTCTGCGACGAACTCGATGTATTGCTTCATCAAGTTCGAGT 7286 Query 24010 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 24069 |||| || | ||| |||||||||| |||| | || ||||||||||| || | Sbjct 7285 TCATGCCAAGAAGCGCGCATGGAAGAGCCTCAGTCAAGAACTCTTGTTCAATCTCAACAG 7226 Query 24070 CGTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAA 24127 | || || || | | |||| || | | | || || | | | || || || Sbjct 7225 CCTCGGTGATGACA--TCTTGGACAGCCTGCTTGCTTGGGCGGTGCTTCAAGTGGGAGAA 7168 Query 24128 CATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAA 24187 | | |||||||| ||| ||| ||||| ||||| | || | || ||||| || Sbjct 7167 AAGGAGGCATGCGAAGTCGGTGTGAAGACCTTCGTCACGGGAGATGAGCTCATTGGAGAA 7108 Query 24188 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 24247 ||||| || | ||| | |||||| || || ||||| || || || || ||||||||| Sbjct 7107 AGTGAGACCAGCCATCAAGCCACGTTTCTTGAGCCAGAAGATAGAGGCGAATGATCCACT 7048 Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 24279 |||||||||||||| || || ||||| |||| Sbjct 7047 GAAGAAAATTCCTTCAACAGCAGCAAAAGCAA 7016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593692841610000