Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq485 143 3e-29 seq3755 123 3e-23 seq3721 111 2e-19 >seq485 Length=41282 Score = 143 bits (158), Expect = 3e-29 Identities = 203/285 (71%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||| |||||||||||||| || |||||||| | || ||| | ||| || Sbjct 6551 ATCTGGCAGATGTATAAAAAGGCCGAGGCATCCTTCTGGACGGCAGAAGAGATCGACTTG 6610 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 || |||||| |||||| | | | || || | |||||| | |||||| Sbjct 6611 TCAAAGGACCTTCATGACTGGAACAACAGACTCAATGATGATGAGCGCTACTTCATCTCT 6670 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || ||||| || |||||| || || ||||| || || |||||||| Sbjct 6671 CACGTACTCGCATTCTTCGCAGCATCCGACGGAATTGTTAACGAAAACCTCGTCGAGCGC 6730 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | || || || | ||||||| || ||||||||||| || || || ||| Sbjct 6731 TTCAGTGGTGAAGTTCAAATCCCCGAGGCCCGTTGCTTCTACGGTTTCCAAATTATGATG 6790 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| |||| ||||| |||||||||||| ||| Sbjct 6791 GAGAACATCCACTCCGAAACATATTCTCTCCTCATCGACACCTAC 6835 Score = 111 bits (122), Expect = 2e-19 Identities = 306/464 (66%), Gaps = 4/464 (1%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 || ||| | || ||||||| || ||||| | | ||||| | || | | | || Sbjct 6940 CCTTGCATTAAGAAGAAGGCTGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTACC 6999 Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 |||| | ||||| || || || || || || || || | ||||| || ||| Sbjct 7000 TTCGCTCAACGCCTAGTTGCTTTTGCTGCTGTTGAAGGAATTTTCTTCAGTGGATCATTC 7059 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 ||| | || || |||||||||||||| ||| | ||| | || || |||||| ||| ||| Sbjct 7060 GCCTCTATCTTCTGGCTCAAGAAACGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGAG 7119 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 ||||||||| | ||||| ||||| || |||||| || || | || ||| || ||| Sbjct 7120 CTCATCTCCCGTGACGAAGGTCTTCACACCGACTTCGCATGCCTCCTTTTCTCCCACTTG 7179 Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268 ||| || || ||| | | ||| || || ||||||| || || | || || Sbjct 7180 AAGCACCGCCCAAGCAAGCAGGCTGTCCAAGATGTCATCACCGAGGCTGTTGAGATTGAA 7239 Query 117269 CAGCGCTTCCTCACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAA-ACGA 117326 || ||| | || || || || || |||| || || || | || | |||| || Sbjct 7240 CAAGAGTTCTTGACTGAGGCTCTTCC-ATGCGCGCTTCTTGGCATGAACT-CGAACTTGA 7297 Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGC 117386 || ||||||||||||||||||||| ||| | || || | | || | || |||| Sbjct 7298 TGAAGCAATACATCGAGTTCGTCGCAGACCGTCTCCTCGTTGCTCTTGGTAACGACAAGG 7357 Query 117387 ACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCC 117430 ||||| | ||||||| | ||||| ||| | ||||||| Sbjct 7358 TGTACAAATCTGCCAACCCCTTCGACTTCATGGAGAACATCTCC 7401 >seq3755 Length=35748 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| |||||||||||| |||| || ||| || | Sbjct 18515 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 18456 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || || | ||||| ||||| || ||| | || || Sbjct 18455 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAA 18396 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| ||| ||||| || || || || | |||||||| |||||||||| Sbjct 18395 CAACGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 18336 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| |||||| |||| || || Sbjct 18335 ATCCAAAAGGAGTCCACTCTTCA 18313 >seq3721 Length=43933 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| ||||| |||||||| | || |||||| | |||| | | | Sbjct 40361 TCGTCAAGACTCTCACCGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCG 40420 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | ||||| || || | || || |||||||| || ||||||||||||| || | Sbjct 40421 ACAATGTCAAGTCTAAGATCCAAGATAAGGAGGGCATTCCTCCGGACCAGCAACGTCTGA 40480 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 | | ||| || ||||| || || |||| || |||||| ||||||||||||||| |||| Sbjct 40481 TTTTCGCCGGTAAACAACTCGAAGACGGCCGAACCCTCTCCGACTACAACATCCAAAAGG 40540 Query 40880 A 40880 | Sbjct 40541 A 40541 Score = 107 bits (118), Expect = 2e-18 Identities = 137/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| |||||||| |||| || || ||| ||||| | | | |||| ||||| Sbjct 40090 ACCGGCAAGACCATCACTCTCGAGGTTGAGTCCAGCGACACCATCGACAACG-TCAAGAG 40148 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | || || ||||| || ||| ||||||| || || | |||| ||| ||||| Sbjct 40149 CAAGATCCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAA 40208 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| || ||| | | ||||||||||||||| |||||| | || || || Sbjct 40209 GCAGCTTGAAGACGGTCGTACCTTGAGCGACTACAACATCCAAAAGGAGTCTACTCTCCA 40268 Query 40893 TCTAGT 40898 ||| || Sbjct 40269 TCTCGT 40274 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || |||||||| | || || || | | Sbjct 40579 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 40638 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| ||||| | || || ||||| ||||| |||||||| Sbjct 40639 GACACCATCGACAATGTAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAG 40698 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| || || || ||||| || || | || || || |||||||||| Sbjct 40699 CAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACAAC 40758 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || || || ||| | || ||||| Sbjct 40759 ATTCAAAAAGAGTCGACACTGCA 40781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515194244070000