Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq485 143 3e-29
seq3755 123 3e-23
seq3721 111 2e-19
>seq485
Length=41282
Score = 143 bits (158), Expect = 3e-29
Identities = 203/285 (71%), Gaps = 3/285 (1%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| ||||| |||||||||||||| || |||||||| | || ||| | ||| ||
Sbjct 6551 ATCTGGCAGATGTATAAAAAGGCCGAGGCATCCTTCTGGACGGCAGAAGAGATCGACTTG 6610
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752
|| |||||| |||||| | | | || || | |||||| | ||||||
Sbjct 6611 TCAAAGGACCTTCATGACTGGAACAACAGACTCAATGATGATGAGCGCTACTTCATCTCT 6670
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || || || ||||| || |||||| || || ||||| || || ||||||||
Sbjct 6671 CACGTACTCGCATTCTTCGCAGCATCCGACGGAATTGTTAACGAAAACCTCGTCGAGCGC 6730
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| | || || || | ||||||| || ||||||||||| || || || |||
Sbjct 6731 TTCAGTGGTGAAGTTCAAATCCCCGAGGCCCGTTGCTTCTACGGTTTCCAAATTATGATG 6790
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||| | ||||| |||| ||||| |||||||||||| |||
Sbjct 6791 GAGAACATCCACTCCGAAACATATTCTCTCCTCATCGACACCTAC 6835
Score = 111 bits (122), Expect = 2e-19
Identities = 306/464 (66%), Gaps = 4/464 (1%)
Strand=Plus/Plus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028
|| ||| | || ||||||| || ||||| | | ||||| | || | | | ||
Sbjct 6940 CCTTGCATTAAGAAGAAGGCTGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTACC 6999
Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088
|||| | ||||| || || || || || || || || | ||||| || |||
Sbjct 7000 TTCGCTCAACGCCTAGTTGCTTTTGCTGCTGTTGAAGGAATTTTCTTCAGTGGATCATTC 7059
Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148
||| | || || |||||||||||||| ||| | ||| | || || |||||| ||| |||
Sbjct 7060 GCCTCTATCTTCTGGCTCAAGAAACGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGAG 7119
Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
||||||||| | ||||| ||||| || |||||| || || | || ||| || |||
Sbjct 7120 CTCATCTCCCGTGACGAAGGTCTTCACACCGACTTCGCATGCCTCCTTTTCTCCCACTTG 7179
Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268
||| || || ||| | | ||| || || ||||||| || || | || ||
Sbjct 7180 AAGCACCGCCCAAGCAAGCAGGCTGTCCAAGATGTCATCACCGAGGCTGTTGAGATTGAA 7239
Query 117269 CAGCGCTTCCTCACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAA-ACGA 117326
|| ||| | || || || || || |||| || || || | || | |||| ||
Sbjct 7240 CAAGAGTTCTTGACTGAGGCTCTTCC-ATGCGCGCTTCTTGGCATGAACT-CGAACTTGA 7297
Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGC 117386
|| ||||||||||||||||||||| ||| | || || | | || | || ||||
Sbjct 7298 TGAAGCAATACATCGAGTTCGTCGCAGACCGTCTCCTCGTTGCTCTTGGTAACGACAAGG 7357
Query 117387 ACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCC 117430
||||| | ||||||| | ||||| ||| | |||||||
Sbjct 7358 TGTACAAATCTGCCAACCCCTTCGACTTCATGGAGAACATCTCC 7401
>seq3755
Length=35748
Score = 123 bits (136), Expect = 3e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||| |||||||||||| |||| || ||| || |
Sbjct 18515 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 18456
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | ||||| || || | ||||| ||||| || ||| | || ||
Sbjct 18455 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAA 18396
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | |||| ||| ||||| || || || || | |||||||| ||||||||||
Sbjct 18395 CAACGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 18336
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
||||| |||||| |||| || ||
Sbjct 18335 ATCCAAAAGGAGTCCACTCTTCA 18313
>seq3721
Length=43933
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || ||||| ||||| |||||||| | || |||||| | |||| | | |
Sbjct 40361 TCGTCAAGACTCTCACCGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCG 40420
Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819
| | ||||| || || | || || |||||||| || ||||||||||||| || |
Sbjct 40421 ACAATGTCAAGTCTAAGATCCAAGATAAGGAGGGCATTCCTCCGGACCAGCAACGTCTGA 40480
Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879
| | ||| || ||||| || || |||| || |||||| ||||||||||||||| ||||
Sbjct 40481 TTTTCGCCGGTAAACAACTCGAAGACGGCCGAACCCTCTCCGACTACAACATCCAAAAGG 40540
Query 40880 A 40880
|
Sbjct 40541 A 40541
Score = 107 bits (118), Expect = 2e-18
Identities = 137/186 (74%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772
|| ||||| |||||||| |||| || || ||| ||||| | | | |||| |||||
Sbjct 40090 ACCGGCAAGACCATCACTCTCGAGGTTGAGTCCAGCGACACCATCGACAACG-TCAAGAG 40148
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
|| || | || || ||||| || ||| ||||||| || || | |||| ||| |||||
Sbjct 40149 CAAGATCCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAA 40208
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
||||| || |||| || ||| | | ||||||||||||||| |||||| | || || ||
Sbjct 40209 GCAGCTTGAAGACGGTCGTACCTTGAGCGACTACAACATCCAAAAGGAGTCTACTCTCCA 40268
Query 40893 TCTAGT 40898
||| ||
Sbjct 40269 TCTCGT 40274
Score = 91.5 bits (100), Expect = 2e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || || || || || |||||||| | || || || | |
Sbjct 40579 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 40638
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | ||| ||||| | || || ||||| ||||| ||||||||
Sbjct 40639 GACACCATCGACAATGTAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAG 40698
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || |||| || || || ||||| || || | || || || ||||||||||
Sbjct 40699 CAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACAAC 40758
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|| || || ||| | || |||||
Sbjct 40759 ATTCAAAAAGAGTCGACACTGCA 40781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515194244070000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |