Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq3721 98.7 1e-15
seq3755 82.4 9e-11
>seq3721
Length=43933
Score = 98.7 bits (108), Expect = 1e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
||||| |||| ||| ||| |||||||| ||||| || | ||||| || | || ||
Sbjct 40787 ACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGATAGAGTACGGCCATCCTCG 40728
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
|||||||||||||| || || || || |||||||| | || | | |||||| || |
Sbjct 40727 AGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 40668
Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154
||||| || | | | | ||||| ||| || || || | |||||||| ||
Sbjct 40667 ATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCAACCTCCAATGTGATGGTCTTT 40608
Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || ||||| || |||||||||||
Sbjct 40607 CCGGTAAGGGTCTTGACGAAGATTTGCAT 40579
>seq3755
Length=35748
Score = 82.4 bits (90), Expect = 9e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015
||| || | || ||| | ||||| || | ||| ||||||||| || ||||| || |
Sbjct 18288 TCCACCACGTAGACGAAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 18347
Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
|| || || | || || || ||||| || ||||| || | || || || || | ||
Sbjct 18348 AAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGG 18407
Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135
| | |||||||||| ||| || |||| | | | || || ||||| ||
Sbjct 18408 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAAC 18467
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||| ||||||||||| ||||| || ||||| || ||||| |||||
Sbjct 18468 CTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 18515
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571789902585000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |