Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq3721 113 3e-20
seq3755 87.8 1e-12
>seq3721
Length=43933
Score = 113 bits (124), Expect = 3e-20
Identities = 145/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||| ||| | |||| ||| || || |||||||||||||| || ||| ||||
Sbjct 40562 AGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCT 40503
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | || || || |||||||| || || |||||||| || | || |||||| ||
Sbjct 40502 TCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGAATGCCCTCCTTATCT 40443
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | || | | || | ||||| |||||||| || | ||||||||
Sbjct 40442 TGGATCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTC 40383
Query 34358 TTGCCGGTGAGAGTTTTCAC 34377
|||||||||||||| || ||
Sbjct 40382 TTGCCGGTGAGAGTCTTGAC 40363
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| || || | ||||||| ||| | ||||| || ||||| ||||| || || |||
Sbjct 41033 CCGCCACGGAGACGAAGCACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCAGAC 40974
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| | | | || ||||||||||| || ||||| || | ||||| ||||| ||
Sbjct 40973 AGTGTTCTGCCATCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGG 40914
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| |||||| ||| | | | || | ||| | ||||| ||
Sbjct 40913 ATACCCTCCTTGTCTTGGATCTTTGACTTGACGTTATCAATGGTATCCGAAGATTCCACT 40854
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||| ||||| || ||||| | ||| || || |||||||||||
Sbjct 40853 TCCAACGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 40807
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
||||| || |||||||||||||| || |||| | || || | |||||| || || ||
Sbjct 40769 TCTTTTTGAATGTTGTAGTCGGATAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAG 40710
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| || || |||||||| || | | |||||| || || || ||||| || |
Sbjct 40709 ATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGGATTTTCGACTTTACATTG 40650
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | || | ||| || || |||| |||||||| || ||||| || || || ||
Sbjct 40649 TCGATGGTGTCTGACGACTCAACCTCCAATGTGATGGTCTTTCCGGTAAGGGTCTTGACG 40590
Query 34379 AAGATCTGCAT 34389
||||| |||||
Sbjct 40589 AAGATTTGCAT 40579
>seq3755
Length=35748
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || | || |||| ||| | ||| || || || ||||||||||||||
Sbjct 18288 TCCACCACGTAGACGAAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 18347
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| || | || || | |||||||| ||||| || | || || || || |||
Sbjct 18348 AAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGG 18407
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | ||||||||| ||||| ||| | || | | || | ||| | ||||| ||
Sbjct 18408 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAAC 18467
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||||||||| || ||||| || || || |||||||||||
Sbjct 18468 CTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 18515
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323056742420000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |