Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq485 118 9e-22 seq3721 93.3 4e-14 >seq485 Length=41282 Score = 118 bits (130), Expect = 9e-22 Identities = 229/335 (68%), Gaps = 5/335 (1%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | ||||| |||||||| || ||||| || ||||| | ||||| | ||| || Sbjct 6551 ATCTGGCAGATGTATAAAAAGGCCGAGGCATCCTTCTGGACGGCAGAAGAGATCGACTTG 6610 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || || ||| | | ||||| || |||| | | || || Sbjct 6611 TCAAAGGACCTTCATGACTGGAACAACAGACTCAATGATGATGAGCGCTACTTCATCTCT 6670 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||| |||||||| || ||||||||||| || | ||||| | Sbjct 6671 CACGTACTCGCATTCTTCGCAGCATCCGACGGAATTGTTAACGAAAACCTCGTCGAGCGC 6730 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || ||||| ||| | | ||||| | ||||| ||||| || ||| | || Sbjct 6731 TTCAGTGGTGAAGTTCAAATCCCCGAGGCCCGTTGCTTCTACGGTTTCCAAATTATGATG 6790 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGG-ACAACGA 57865 || ||| | || || |||| ||||| || |||||||| || ||| | |||| |||| | Sbjct 6791 GAGAACATCCACTCCGAAACATATTCTCTCCTCATCGACACCTACATTAAGGAACAAGCA 6850 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAA 57900 | | |||| || || |||||||| || || |||| Sbjct 6851 CAAAAAACATA-TCTCTTCAACGCAATTGATACAA 6884 >seq3721 Length=43933 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || ||||| | || ||||| |||| Sbjct 40579 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 40638 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || ||| || ||||| || | || || |||||| Sbjct 40639 GACACCATCGACAATGTAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAG 40698 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || ||||| || ||| | || || ||| | ||| || ||| Sbjct 40699 CAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACAAC 40758 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||| ||||| || || |||| ||| | || | || |||| Sbjct 40759 ATTCAAAAAGAGTCGACACTGCACTTGGTTCTTCGTCTCCGTGGTGGTA 40807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445744808190000