Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq485 118 9e-22
seq3721 93.3 4e-14
>seq485
Length=41282
Score = 118 bits (130), Expect = 9e-22
Identities = 229/335 (68%), Gaps = 5/335 (1%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | ||||| |||||||| || ||||| || ||||| | ||||| | ||| ||
Sbjct 6551 ATCTGGCAGATGTATAAAAAGGCCGAGGCATCCTTCTGGACGGCAGAAGAGATCGACTTG 6610
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| ||||| || || ||| | | ||||| || |||| | | || ||
Sbjct 6611 TCAAAGGACCTTCATGACTGGAACAACAGACTCAATGATGATGAGCGCTACTTCATCTCT 6670
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| | || || ||||| |||||||| || ||||||||||| || | ||||| |
Sbjct 6671 CACGTACTCGCATTCTTCGCAGCATCCGACGGAATTGTTAACGAAAACCTCGTCGAGCGC 6730
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| ||||| ||| | | ||||| | ||||| ||||| || ||| | ||
Sbjct 6731 TTCAGTGGTGAAGTTCAAATCCCCGAGGCCCGTTGCTTCTACGGTTTCCAAATTATGATG 6790
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGG-ACAACGA 57865
|| ||| | || || |||| ||||| || |||||||| || ||| | |||| |||| |
Sbjct 6791 GAGAACATCCACTCCGAAACATATTCTCTCCTCATCGACACCTACATTAAGGAACAAGCA 6850
Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAA 57900
| | |||| || || |||||||| || || ||||
Sbjct 6851 CAAAAAACATA-TCTCTTCAACGCAATTGATACAA 6884
>seq3721
Length=43933
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||| || || || || || ||||| | || ||||| ||||
Sbjct 40579 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 40638
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || || ||| || ||||| || | || || ||||||
Sbjct 40639 GACACCATCGACAATGTAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAG 40698
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||||| || || ||||| || ||| | || || ||| | ||| || |||
Sbjct 40699 CAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACAAC 40758
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||||||||| ||||| || || |||| ||| | || | || ||||
Sbjct 40759 ATTCAAAAAGAGTCGACACTGCACTTGGTTCTTCGTCTCCGTGGTGGTA 40807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445744808190000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |