Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq485 147 4e-30 >seq485 Length=41282 Score = 147 bits (162), Expect = 4e-30 Identities = 168/225 (75%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 101851 CATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGAT---TTGGC 101907 ||| |||||||||| | |||||| | | ||||| ||| ||| ||| | || || Sbjct 6945 CATTAAGAAGAAGGCTGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTACCTTCGC 7004 Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967 ||| | ||||| |||||||| ||||||||||| ||||| ||||| ||||||| || Sbjct 7005 TCAACGCCTAGTTGCTTTTGCTGCTGTTGAAGGAATTTTCTTCAGTGGATCATTCGCCTC 7064 Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 || |||||| ||||||| | || | || |||||||||| | |||||||||| |||| Sbjct 7065 TATCTTCTGGCTCAAGAAACGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGAGCTCAT 7124 Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 || | |||||||||||||| |||||| |||||| | || || Sbjct 7125 CTCCCGTGACGAAGGTCTTCACACCGACTTCGCATGCCTCCTTTT 7169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989534868700625