Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq68 224 1e-53 seq485 91.5 2e-13 >seq68 Length=8748 Score = 224 bits (248), Expect = 1e-53 Identities = 1125/1776 (63%), Gaps = 35/1776 (2%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||||||||| || |||||||| | | ||||| || ||||||||||| || || ||| Sbjct 2382 GTGAATTGAATCGGTGCGGATGCAGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 2441 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || || |||| ||| ||||||||| ||| | ||| | || ||| ||| Sbjct 2442 CCTAGTTTCCAACCGGCAAAATGCATGGACGTAATCTTGCCCATGGTGGGGTCTTTCATA 2501 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || || ||||| ||||| ||||| | ||| || || | ||| || ||||||| | Sbjct 2502 TGAATGTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGCGGCCATTTGAACA 2561 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| | Sbjct 2562 ATTGTTCGTTGGGAAATCTCCCACACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 2621 Query 62286 TTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 || | | ||||| || || || || || | || || | ||||| || | || | Sbjct 2622 TTGGGGATGTTCTGGATTGAACCGCCGTCAGCAATGATGCGGTTCTTCATGTTGTCTGAC 2681 Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402 || ||| | ||| | | | | || || |||||||| ||||||||||| || Sbjct 2682 CACAATCCCATGTCGACAAGATCCTTGAGAAGCCATGGGTTAACGACTTGGAATTCCCCT 2741 Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462 | || || | |||| ||| || ||| || || ||||| | |||||||| || Sbjct 2742 GCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACACTCATTAAAACCG 2801 Query 62463 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62522 | ||| |||| || || || |||||||| || || | ||||| || | | |||| Sbjct 2802 AGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACTGTTGCGGACACCG 2861 Query 62523 TATGTTCTGATTT-TATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANN 62581 ||| | |||| | |||| || | | |||| | |||||| || | ||| || Sbjct 2862 TATTGTTTGATGGATTTCTTCAAGCTAT-CCCAGTCCCAAAGGTCGGTAGGTGTGACTCC 2920 Query 62582 NNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGG 62641 ||||| || || || | | || ||| | || || ||||| | Sbjct 2921 CCACATATCGTATTGAAGTTCGCCTTTTGAGACAGGTGAGCCTTCGTAAGTCTCATAGGT 2980 Query 62642 TCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAA 62701 || || || ||| | | | | | | |||||| ||| ||||| || || || Sbjct 2981 ACCCAGCTCCTTAGCAATCTCAACAGAAGACGTCAATGCAGCGTGGTAAATAGTCTCGAA 3040 Query 62702 GATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG--AATA 62759 ||| | || || | | ||||| || |||||||| ||| ||||| || | Sbjct 3041 GATTTGAACGTTGAGGTGCTTAGCTTCAGGTGACTCAAATGG-TAAACGAAGAGCCAAGA 3099 Query 62760 AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATT 62819 || || || || | ||||| ||||| | | ||||||| | || | ||| | || Sbjct 3100 AA-GCATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGTGACGGAAATT-GCTCTT 3157 Query 62820 TCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 62878 || | ||||| | | || || || || || || || || || || | || ||||||| Sbjct 3158 TCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTCCTGACAAC 3217 Query 62879 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TACAAACA 62934 |||| || || | || || | || || | || | | | || | || | | Sbjct 3218 GACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTCCCTCGTTCATGTCCACAAA 3277 Query 62935 TGTTC--AATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTG 62992 |||| | |||| |||||||| ||||| || || |||| | | | |||| Sbjct 3278 TGTTGGGAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCATCTGGTGCAGAGTATTC 3337 Query 62993 TATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTT 63052 | || || ||||| ||||| | || || || | || | ||| || ||||| Sbjct 3338 GACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTT 3397 Query 63053 TTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTAT 63112 || || || |||||||| ||||| |||||||| | || || || | |||| || | Sbjct 3398 CTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAG 3457 Query 63113 AATCGCTTTCCAGACGACTCGAGCCTTTATTATA----GATTTGTATCTCCTTTCTCTT- 63167 ||| | | ||| | | | || || || | || | || || | ||||| | Sbjct 3458 AATGGAGTACCAAAGCTTTTGGGCTTTGATGGTTTTGCGACCTCTACCTTCCTTCTCATA 3517 Query 63168 --TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGAC 63225 || |||||| | | |||||| || || || | |||| |||| | ||| | Sbjct 3518 ACTCTCATAGAG------AGC-TTCGAATTCATCGCCGTATACATCAGCCAACCCAGGGC 3570 Query 63226 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63285 |||| | |||||||||| | ||| ||||||| | | || || ||||||||||||| Sbjct 3571 ATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGAT 3630 Query 63286 CAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCT 63345 | |||||||| | ||| || ||||| | | | ||| || || || |||| Sbjct 3631 CCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCT 3690 Query 63346 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63405 || || || || ||| | | || || | ||||| || || | ||| || || | Sbjct 3691 TTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATG 3750 Query 63406 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63465 | ||||| || |||||||| ||||| || | ||||| || || || || |||||| | Sbjct 3751 CACCAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTA 3810 Query 63466 ACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCAC 63525 ||| || | |||||| || || ||||||||||||||| || ||| | ||| | |||| Sbjct 3811 GCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCAC 3870 Query 63526 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT- 63584 | || | ||| ||||| || || || || |||| || || | || || ||| Sbjct 3871 GGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACA-CGTC 3929 Query 63585 TTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 || | || || || || || || || ||||| || |||||| || || || || Sbjct 3930 TTGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGAT 3989 Query 63645 GACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 63704 || | ||| | | || || || || | ||||| || ||||| || || || Sbjct 3990 GAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTAT 4049 Query 63705 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCC 63763 || | || | | ||||| |||||||| || || ||||| || | ||||| || Sbjct 4050 TTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCG-TGAATACC 4108 Query 63764 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 || || |||||||| | ||| || || || | ||| Sbjct 4109 AACGGCAACACGCATGATCATTTGTTGTGGACGTTC 4144 >seq485 Length=41282 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 |||||||| ||| ||| ||||| ||||| | || | || || || || ||||| Sbjct 7160 CATGCGAAGTCGGTGTGAAGACCTTCGTCACGGGAGATGAGCTCATTGGAGAAAGTGAGA 7101 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || | ||| | |||||| || || ||||| || || || ||||||||||| ||||| Sbjct 7100 CCAGCCATCAAGCCACGTTTCTTGAGCCAGAAGATAGAGGCGAATGATCCACTGAAGAAA 7041 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAA 33726 |||||||| || |||||||| |||| Sbjct 7040 ATTCCTTCAACAGCAGCAAAAGCAA 7016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629787093210000