Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq68 114 1e-20
>seq68
Length=8748
Score = 114 bits (126), Expect = 1e-20
Identities = 393/610 (64%), Gaps = 2/610 (0%)
Strand=Plus/Plus
Query 37942 AAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCAT 38001
|| |||| || ||||||| || || || |||||| |||||||| || | |||
Sbjct 3537 AATTCATCGCCGTATACATCAGCCAACCCAGGGCATTCGTTGGGACACATCAGTGTCCAG 3596
Query 38002 TCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATAA 38060
||| | | ||||| || || | |||||| | ||| || | ||| || || ||| || |
Sbjct 3597 TCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAATCCACAAAGC-GTAGAAGAG 3655
Query 38061 ATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATAT 38120
||| || | |||||| || || ||||||| | | ||||| ||||| |
Sbjct 3656 ATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTCGGAGGTCCAGAAACTCGAAAAC 3715
Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTG 38180
|| |||||||| || || | || || | | ||| || || | || | || |||||
Sbjct 3716 GTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCACCAGGACGCTTGTTTCCACCCTG 3775
Query 38181 ATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTT 38240
| || |||||| | || || || | | || || |||||| || |||||||| || ||
Sbjct 3776 GTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCATAGGCACAATACCATTGGAGTT 3835
Query 38241 GCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTAT 38300
|| || |||||| || || | ||| |||| || || | || | || ||
Sbjct 3836 ACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGATTCTGTGAATGTTGAGACCGAT 3895
Query 38301 TCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTAT 38360
||||| || | ||| || || | ||| || || | ||||| | ||||| || ||
Sbjct 3896 GCCACCGGCGTTTTTGGAAATCATAGCACACGTCTTGAGGGTATCGTAAATACCATCGAT 3955
Query 38361 ACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGC 38420
||| || ||||| || | | || || || | ||||| ||| || || ||
Sbjct 3956 ACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAAAGTTGAGCTTGTGGTGTACCAGC 4015
Query 38421 GTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTC 38480
| || | |||||| || || || |||| |||| | |||| | || || || ||
Sbjct 4016 GGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTATTTATTGGACATCAAGTTGTAGGTCTC 4075
Query 38481 TATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTG 38540
|| || || ||||| | ||||||||||| | | || | ||| | ||| |||||
Sbjct 4076 AATGGCACTCTCGATATCGTCACCGTGAATACCAACGGCAACACGCATGATCATTTGTTG 4135
Query 38541 TGGTCTTTCT 38550
||| | ||||
Sbjct 4136 TGGACGTTCT 4145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468502105830000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |