Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq68 114 1e-20 >seq68 Length=8748 Score = 114 bits (126), Expect = 1e-20 Identities = 393/610 (64%), Gaps = 2/610 (0%) Strand=Plus/Plus Query 37942 AAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCAT 38001 || |||| || ||||||| || || || |||||| |||||||| || | ||| Sbjct 3537 AATTCATCGCCGTATACATCAGCCAACCCAGGGCATTCGTTGGGACACATCAGTGTCCAG 3596 Query 38002 TCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATAA 38060 ||| | | ||||| || || | |||||| | ||| || | ||| || || ||| || | Sbjct 3597 TCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAATCCACAAAGC-GTAGAAGAG 3655 Query 38061 ATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATAT 38120 ||| || | |||||| || || ||||||| | | ||||| ||||| | Sbjct 3656 ATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTCGGAGGTCCAGAAACTCGAAAAC 3715 Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTG 38180 || |||||||| || || | || || | | ||| || || | || | || ||||| Sbjct 3716 GTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCACCAGGACGCTTGTTTCCACCCTG 3775 Query 38181 ATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTT 38240 | || |||||| | || || || | | || || |||||| || |||||||| || || Sbjct 3776 GTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCATAGGCACAATACCATTGGAGTT 3835 Query 38241 GCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTAT 38300 || || |||||| || || | ||| |||| || || | || | || || Sbjct 3836 ACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGATTCTGTGAATGTTGAGACCGAT 3895 Query 38301 TCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTAT 38360 ||||| || | ||| || || | ||| || || | ||||| | ||||| || || Sbjct 3896 GCCACCGGCGTTTTTGGAAATCATAGCACACGTCTTGAGGGTATCGTAAATACCATCGAT 3955 Query 38361 ACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGC 38420 ||| || ||||| || | | || || || | ||||| ||| || || || Sbjct 3956 ACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAAAGTTGAGCTTGTGGTGTACCAGC 4015 Query 38421 GTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTC 38480 | || | |||||| || || || |||| |||| | |||| | || || || || Sbjct 4016 GGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTATTTATTGGACATCAAGTTGTAGGTCTC 4075 Query 38481 TATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTG 38540 || || || ||||| | ||||||||||| | | || | ||| | ||| ||||| Sbjct 4076 AATGGCACTCTCGATATCGTCACCGTGAATACCAACGGCAACACGCATGATCATTTGTTG 4135 Query 38541 TGGTCTTTCT 38550 ||| | |||| Sbjct 4136 TGGACGTTCT 4145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468502105830000