Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq68 242 5e-59
seq485 98.7 1e-15
>seq68
Length=8748
Score = 242 bits (268), Expect = 5e-59
Identities = 1301/2056 (63%), Gaps = 31/2056 (2%)
Strand=Plus/Plus
Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898
||||||||||| || |||||||| | | ||||| || ||||||||||| || || |||
Sbjct 2382 GTGAATTGAATCGGTGCGGATGCAGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 2441
Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958
|| || |||| ||| ||||||||| ||| | ||| | || ||| |||
Sbjct 2442 CCTAGTTTCCAACCGGCAAAATGCATGGACGTAATCTTGCCCATGGTGGGGTCTTTCATA 2501
Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018
|| || ||||| ||||| ||||| | ||| || || | ||| || ||||||| |
Sbjct 2502 TGAATGTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGCGGCCATTTGAACA 2561
Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 2562 ATTGTTCGTTGGGAAATCTCCCACACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 2621
Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135
|| | | ||||| || || || || || || || || | ||||| || | || |
Sbjct 2622 TTGGGGATGTTCTGGATTGAACCGCCGTCAGCAATGATGCGGTTCTTCATGTTGTCTGAC 2681
Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195
|| ||| | ||| | | | | || || || ||||| ||||| ||||| ||
Sbjct 2682 CACAATCCCATGTCGACAAGATCCTTGAGAAGCCATGGGTTAACGACTTGGAATTCCCCT 2741
Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255
| || || | |||| ||| || ||| || || ||||| | | |||||||| ||
Sbjct 2742 GCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACACTCATTAAAACCG 2801
Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 65315
| ||| |||| || || || |||||||| || || | ||||| || | | ||||
Sbjct 2802 AGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACTGTTGCGGACACCG 2861
Query 65316 TATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNNN 65374
||| | |||| || | || || | ||||| | |||||| || | ||| ||
Sbjct 2862 TATTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTGACTCC 2920
Query 65375 NNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGG 65434
||| || || || | | || ||| | || || || || |
Sbjct 2921 CCACATATCGTATTGAAGTTCGCCTTTTGAGACAGGTGAGCCTTCGTAAGTCTCATAGGT 2980
Query 65435 TCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAA 65494
|| || || ||| | ||| | | | |||||| ||| ||||| || |||||
Sbjct 2981 ACCCAGCTCCTTAGCAATCTCAACAGAAGACGTCAATGCAGCGTGGTAAATAGTCTCGAA 3040
Query 65495 GATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAGAG--AAT 65551
||| | || || | | ||||| ||| | |||||||| ||| ||||| ||
Sbjct 3041 GATTTGAACGTTGAGGTGCTTAGCTTC-AGGTGACTCAAATGG-TAAACGAAGAGCCAAG 3098
Query 65552 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 65611
||| || || || | ||||| ||||| | | ||||||| | || | ||| | |
Sbjct 3099 AAA-GCATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGTGACGGAAATT-GCTCT 3156
Query 65612 TTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 65670
||| | ||||| | | || || || || || || || || || || | || |||||||
Sbjct 3157 TTCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTCCTGACAA 3216
Query 65671 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTAT-TACAAAC 65726
|||| || || | || || | || || | || ||| | || | || |
Sbjct 3217 CGACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTCCCTCGTTCATGTCCACAA 3276
Query 65727 ATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 65784
||||| | |||| |||||||| ||||| || || |||| | | | ||||
Sbjct 3277 ATGTTGGGAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCATCTGGTGCAGAGTATT 3336
Query 65785 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 65844
| || || ||||| ||||| | ||||| || | || | ||| || ||||
Sbjct 3337 CGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCT 3396
Query 65845 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 65904
| || || || |||||||| ||||| |||||||| | || || || | |||| || |
Sbjct 3397 TCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGA 3456
Query 65905 TAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGT-ATCTCTTTTCTCTTTCG 65963
||| | | ||| | | | || || || | |||| | |||| || |||
Sbjct 3457 GAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---TTTGCGACCTCTACCTTCCTTCT 3513
Query 65964 TATAG-TGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATT 66021
||| | | ||| | |||||| || || || | |||| |||| ||||| ||||
Sbjct 3514 CATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCAACCCAGGGCATT 3573
Query 66022 CATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAG 66081
| | |||||||||| | ||| ||||||| | | || || |||||||||||||| |
Sbjct 3574 CGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCG 3633
Query 66082 GAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 66141
||||||| | ||| || | ||| | || | ||| || || || ||||||
Sbjct 3634 GAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTC 3693
Query 66142 TAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTC 66201
|| || || ||| | | || || ||||| || || | ||| || || | | |
Sbjct 3694 GGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCAC 3753
Query 66202 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 66261
|||| || |||||||| ||||| || | ||||| || || || || |||||| | ||
Sbjct 3754 CAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCA 3813
Query 66262 TTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAA 66321
| || | |||||||||||| |||||||||| |||| || ||| ||| | ||||| |
Sbjct 3814 TAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGA 3873
Query 66322 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTT 66380
| | ||| ||||| || || || || |||| || || | || || ||| ||
Sbjct 3874 TTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACA-CGTCTTG 3932
Query 66381 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 66440
| ||||| || || || || |||||||| ||| |||||| || || || || ||
Sbjct 3933 AGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAA 3992
Query 66441 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 66500
| ||| | || || || || | ||||| || ||||| || || ||||
Sbjct 3993 AGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTATTTA 4052
Query 66501 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTAC 66559
| || | | ||||| |||||||| || || ||||| || | ||||| || ||
Sbjct 4053 TTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCG-TGAATACCAAC 4111
Query 66560 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 66619
|| |||||||| | ||| || || || | ||| | | ||| | | | | |
Sbjct 4112 GGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTTCCATCGAGTCGAAGAAG 4171
Query 66620 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 66679
||| ||| || | || || || || || || | ||| |||||||| ||||| |
Sbjct 4172 GTATGATCGCTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGAC 4231
Query 66680 AATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAA 66738
|| | |||||||| | | | || | |||| ||| | | | ||| |
Sbjct 4232 GATTGCGGAGTTGAGCTCTGCTTCATGCCTCATAAC-GCATTCGTATGTCTCCTTACTGA 4290
Query 66739 TAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTT 66798
| || |||||| | | |||| | || |||||||||| |||| || || || |
Sbjct 4291 TCATAGGAGAAGGATGGTTATTTCTTGGGTTGACATAGTGATATAAGTCGCTGATGACGT 4350
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
||| | || || |||| |||||| || || ||||| || || | ||| || | |
Sbjct 4351 GGGAGAATTGCTTCTTGGTTTGTTTGTGGAGGTTGGATACTGCAATACGAGCAGCGAGGA 4410
Query 66859 TGGCATAATCCGGATG 66874
|||||||||| || ||
Sbjct 4411 TGGCATAATCGGGGTG 4426
>seq485
Length=41282
Score = 98.7 bits (108), Expect = 1e-15
Identities = 291/449 (65%), Gaps = 0/449 (0%)
Strand=Plus/Minus
Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913
|||||| || || ||||| ||||| || | || ||||| || || || || ||| |
Sbjct 7464 CATAACACCAGCCTTCTGGTAGTCACCGACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 7405
Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCC 35973
|| || || || |||||||| ||||| || ||| | || || | || | ||
Sbjct 7404 TAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGCAGATTTGTACACCTTGTCGTTACC 7345
Query 35974 CAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 36033
| || | | | |||||||| || || || ||| ||||||| | | ||
Sbjct 7344 AAGAGCAACGAGGAGACGGTCTGCGACGAACTCGATGTATTGCTTCATCAAGTTCGAGTT 7285
Query 36034 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 36093
||| || | ||| |||||||||| |||| | || ||||||||||| || ||
Sbjct 7284 CATGCCAAGAAGCGCGCATGGAAGAGCCTCAGTCAAGAACTCTTGTTCAATCTCAACAGC 7225
Query 36094 GTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACAT 36153
|| || || | | | || | | | || || | | | || || || |
Sbjct 7224 CTCGGTGATGACATCTTGGACAGCCTGCTTGCTTGGGCGGTGCTTCAAGTGGGAGAAAAG 7165
Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213
| |||||||| ||| ||| ||||| ||||| | || | || ||||| || ||
Sbjct 7164 GAGGCATGCGAAGTCGGTGTGAAGACCTTCGTCACGGGAGATGAGCTCATTGGAGAAAGT 7105
Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 36273
||| || | ||| | |||||| || || ||||| || || || || ||||||||| ||
Sbjct 7104 GAGACCAGCCATCAAGCCACGTTTCTTGAGCCAGAAGATAGAGGCGAATGATCCACTGAA 7045
Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAA 36302
|||||||||||| || || ||||| ||||
Sbjct 7044 GAAAATTCCTTCAACAGCAGCAAAAGCAA 7016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658140919755000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |