Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq68 242 5e-59 seq485 98.7 1e-15 >seq68 Length=8748 Score = 242 bits (268), Expect = 5e-59 Identities = 1301/2056 (63%), Gaps = 31/2056 (2%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||||||||| || |||||||| | | ||||| || ||||||||||| || || ||| Sbjct 2382 GTGAATTGAATCGGTGCGGATGCAGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 2441 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || || |||| ||| ||||||||| ||| | ||| | || ||| ||| Sbjct 2442 CCTAGTTTCCAACCGGCAAAATGCATGGACGTAATCTTGCCCATGGTGGGGTCTTTCATA 2501 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || || ||||| ||||| ||||| | ||| || || | ||| || ||||||| | Sbjct 2502 TGAATGTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGCGGCCATTTGAACA 2561 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| | Sbjct 2562 ATTGTTCGTTGGGAAATCTCCCACACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 2621 Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 || | | ||||| || || || || || || || || | ||||| || | || | Sbjct 2622 TTGGGGATGTTCTGGATTGAACCGCCGTCAGCAATGATGCGGTTCTTCATGTTGTCTGAC 2681 Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195 || ||| | ||| | | | | || || || ||||| ||||| ||||| || Sbjct 2682 CACAATCCCATGTCGACAAGATCCTTGAGAAGCCATGGGTTAACGACTTGGAATTCCCCT 2741 Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255 | || || | |||| ||| || ||| || || ||||| | | |||||||| || Sbjct 2742 GCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACACTCATTAAAACCG 2801 Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 65315 | ||| |||| || || || |||||||| || || | ||||| || | | |||| Sbjct 2802 AGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACTGTTGCGGACACCG 2861 Query 65316 TATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNNN 65374 ||| | |||| || | || || | ||||| | |||||| || | ||| || Sbjct 2862 TATTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTGACTCC 2920 Query 65375 NNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGG 65434 ||| || || || | | || ||| | || || || || | Sbjct 2921 CCACATATCGTATTGAAGTTCGCCTTTTGAGACAGGTGAGCCTTCGTAAGTCTCATAGGT 2980 Query 65435 TCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAA 65494 || || || ||| | ||| | | | |||||| ||| ||||| || ||||| Sbjct 2981 ACCCAGCTCCTTAGCAATCTCAACAGAAGACGTCAATGCAGCGTGGTAAATAGTCTCGAA 3040 Query 65495 GATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAGAG--AAT 65551 ||| | || || | | ||||| ||| | |||||||| ||| ||||| || Sbjct 3041 GATTTGAACGTTGAGGTGCTTAGCTTC-AGGTGACTCAAATGG-TAAACGAAGAGCCAAG 3098 Query 65552 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 65611 ||| || || || | ||||| ||||| | | ||||||| | || | ||| | | Sbjct 3099 AAA-GCATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGTGACGGAAATT-GCTCT 3156 Query 65612 TTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 65670 ||| | ||||| | | || || || || || || || || || || | || ||||||| Sbjct 3157 TTCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTCCTGACAA 3216 Query 65671 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTAT-TACAAAC 65726 |||| || || | || || | || || | || ||| | || | || | Sbjct 3217 CGACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTCCCTCGTTCATGTCCACAA 3276 Query 65727 ATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 65784 ||||| | |||| |||||||| ||||| || || |||| | | | |||| Sbjct 3277 ATGTTGGGAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCATCTGGTGCAGAGTATT 3336 Query 65785 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 65844 | || || ||||| ||||| | ||||| || | || | ||| || |||| Sbjct 3337 CGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCT 3396 Query 65845 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 65904 | || || || |||||||| ||||| |||||||| | || || || | |||| || | Sbjct 3397 TCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGA 3456 Query 65905 TAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGT-ATCTCTTTTCTCTTTCG 65963 ||| | | ||| | | | || || || | |||| | |||| || ||| Sbjct 3457 GAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---TTTGCGACCTCTACCTTCCTTCT 3513 Query 65964 TATAG-TGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATT 66021 ||| | | ||| | |||||| || || || | |||| |||| ||||| |||| Sbjct 3514 CATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCAACCCAGGGCATT 3573 Query 66022 CATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAG 66081 | | |||||||||| | ||| ||||||| | | || || |||||||||||||| | Sbjct 3574 CGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCG 3633 Query 66082 GAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 66141 ||||||| | ||| || | ||| | || | ||| || || || |||||| Sbjct 3634 GAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTC 3693 Query 66142 TAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTC 66201 || || || ||| | | || || ||||| || || | ||| || || | | | Sbjct 3694 GGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCAC 3753 Query 66202 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 66261 |||| || |||||||| ||||| || | ||||| || || || || |||||| | || Sbjct 3754 CAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCA 3813 Query 66262 TTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAA 66321 | || | |||||||||||| |||||||||| |||| || ||| ||| | ||||| | Sbjct 3814 TAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGA 3873 Query 66322 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTT 66380 | | ||| ||||| || || || || |||| || || | || || ||| || Sbjct 3874 TTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACA-CGTCTTG 3932 Query 66381 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 66440 | ||||| || || || || |||||||| ||| |||||| || || || || || Sbjct 3933 AGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAA 3992 Query 66441 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 66500 | ||| | || || || || | ||||| || ||||| || || |||| Sbjct 3993 AGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTATTTA 4052 Query 66501 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTAC 66559 | || | | ||||| |||||||| || || ||||| || | ||||| || || Sbjct 4053 TTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCG-TGAATACCAAC 4111 Query 66560 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 66619 || |||||||| | ||| || || || | ||| | | ||| | | | | | Sbjct 4112 GGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTTCCATCGAGTCGAAGAAG 4171 Query 66620 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 66679 ||| ||| || | || || || || || || | ||| |||||||| ||||| | Sbjct 4172 GTATGATCGCTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGAC 4231 Query 66680 AATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAA 66738 || | |||||||| | | | || | |||| ||| | | | ||| | Sbjct 4232 GATTGCGGAGTTGAGCTCTGCTTCATGCCTCATAAC-GCATTCGTATGTCTCCTTACTGA 4290 Query 66739 TAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTT 66798 | || |||||| | | |||| | || |||||||||| |||| || || || | Sbjct 4291 TCATAGGAGAAGGATGGTTATTTCTTGGGTTGACATAGTGATATAAGTCGCTGATGACGT 4350 Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 ||| | || || |||| |||||| || || ||||| || || | ||| || | | Sbjct 4351 GGGAGAATTGCTTCTTGGTTTGTTTGTGGAGGTTGGATACTGCAATACGAGCAGCGAGGA 4410 Query 66859 TGGCATAATCCGGATG 66874 |||||||||| || || Sbjct 4411 TGGCATAATCGGGGTG 4426 >seq485 Length=41282 Score = 98.7 bits (108), Expect = 1e-15 Identities = 291/449 (65%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 |||||| || || ||||| ||||| || | || ||||| || || || || ||| | Sbjct 7464 CATAACACCAGCCTTCTGGTAGTCACCGACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 7405 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCC 35973 || || || || |||||||| ||||| || ||| | || || | || | || Sbjct 7404 TAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGCAGATTTGTACACCTTGTCGTTACC 7345 Query 35974 CAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 36033 | || | | | |||||||| || || || ||| ||||||| | | || Sbjct 7344 AAGAGCAACGAGGAGACGGTCTGCGACGAACTCGATGTATTGCTTCATCAAGTTCGAGTT 7285 Query 36034 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 36093 ||| || | ||| |||||||||| |||| | || ||||||||||| || || Sbjct 7284 CATGCCAAGAAGCGCGCATGGAAGAGCCTCAGTCAAGAACTCTTGTTCAATCTCAACAGC 7225 Query 36094 GTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACAT 36153 || || || | | | || | | | || || | | | || || || | Sbjct 7224 CTCGGTGATGACATCTTGGACAGCCTGCTTGCTTGGGCGGTGCTTCAAGTGGGAGAAAAG 7165 Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 | |||||||| ||| ||| ||||| ||||| | || | || ||||| || || Sbjct 7164 GAGGCATGCGAAGTCGGTGTGAAGACCTTCGTCACGGGAGATGAGCTCATTGGAGAAAGT 7105 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 36273 ||| || | ||| | |||||| || || ||||| || || || || ||||||||| || Sbjct 7104 GAGACCAGCCATCAAGCCACGTTTCTTGAGCCAGAAGATAGAGGCGAATGATCCACTGAA 7045 Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAA 36302 |||||||||||| || || ||||| |||| Sbjct 7044 GAAAATTCCTTCAACAGCAGCAAAAGCAA 7016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658140919755000