Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3721 105 7e-18 >seq3721 Length=43933 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||| | || ||||||||||||||||| || ||| Sbjct 40805 CCACCACGGAGACGAAGAACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGAT 40746 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || |||||||| ||||||||| |||| ||||||||||| || || || Sbjct 40745 AGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 40686 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || || || |||||| |||| | || | ||||| | | ||| ||| Sbjct 40685 ATACCCTCCTTATCTTGGATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCAACC 40626 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| ||||| | || || ||||| ||||||||| Sbjct 40625 TCCAATGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCATA 40578 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| ||||| || ||||| ||||| || ||| Sbjct 40577 CCACCACGAAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAG 40518 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||| |||||||| || | |||||||||||||| || ||||| Sbjct 40517 AGGGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGA 40458 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || || || ||| || || | | || | || |||| | || ||| Sbjct 40457 ATGCCCTCCTTATCTTGGATCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCGACC 40398 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGA 139754 |||| || | ||||||||||| | || || |||| Sbjct 40397 TCAAGAGTGATGGTCTTGCCGGTGAGAGTCTTGACGA 40361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496039971900000