Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq68 237 2e-57
>seq68
Length=8748
Score = 237 bits (262), Expect = 2e-57
Identities = 1131/1776 (64%), Gaps = 35/1776 (2%)
Strand=Plus/Plus
Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777
||||||||||| || |||||||| | | ||||| || ||||||||||| || || |||
Sbjct 2382 GTGAATTGAATCGGTGCGGATGCAGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 2441
Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837
|| || |||| ||| |||||||| ||| | ||| | || ||| |||
Sbjct 2442 CCTAGTTTCCAACCGGCAAAATGCATGGACGTAATCTTGCCCATGGTGGGGTCTTTCATA 2501
Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897
|| || ||||| ||||| ||||| | ||| || || | ||| || ||||||| |
Sbjct 2502 TGAATGTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGCGGCCATTTGAACA 2561
Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 2562 ATTGTTCGTTGGGAAATCTCCCACACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 2621
Query 78958 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014
|| | | ||||| || || || || || || || || | ||||| || | || |
Sbjct 2622 TTGGGGATGTTCTGGATTGAACCGCCGTCAGCAATGATGCGGTTCTTCATGTTGTCTGAC 2681
Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074
|| ||| | ||| | | | | || || || ||||| ||||| ||||| ||
Sbjct 2682 CACAATCCCATGTCGACAAGATCCTTGAGAAGCCATGGGTTAACGACTTGGAATTCCCCT 2741
Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134
| || || | |||| ||| || ||| || |||||||| | | |||||| ||
Sbjct 2742 GCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACACTCATTAAAACCG 2801
Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194
| ||| |||| || || ||||||||||| || || | ||||| || | | ||||
Sbjct 2802 AGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACTGTTGCGGACACCG 2861
Query 79195 TATGATCTGATTTTATCTTTTAGAGAT-TCCCAATCCCAAAGATCAGACGGGACAACATT 79253
||| | |||| || | || || | ||||| |||||||| || | || ||
Sbjct 2862 TATTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTGACTCC 2920
Query 79254 CCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGG 79313
||| | ||| ||||| || || || | ||| ||| ||| || ||||| |
Sbjct 2921 CCACATATCGTATTGAAGTTCGCCTTTTGAGACAGGTGAGCCTTCGTAAGTCTCATAGGT 2980
Query 79314 TCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAA 79373
|| || | || | ||| | | | ||||| ||| ||||| || |||||
Sbjct 2981 ACCCAGCTCCTTAGCAATCTCAACAGAAGACGTCAATGCAGCGTGGTAAATAGTCTCGAA 3040
Query 79374 AATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA-TCAAATGGATAATTTAAGAG--AAT 79430
|| | ||||| | | ||||| ||| | |||||||| ||| ||||| ||
Sbjct 3041 GATTTGAACGTTGAGGTGCTTAGCTTC-AGGTGACTCAAATGG-TAAACGAAGAGCCAAG 3098
Query 79431 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAAT 79490
||| || || || | ||||| ||||| | | ||||||| | || | ||| | |
Sbjct 3099 AAA-GCATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGTGACGGAAATT-GCTCT 3156
Query 79491 TTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTA 79549
||| | ||||| | | || || || || || || || || || || | |||||||| |
Sbjct 3157 TTCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTCCTGACAA 3216
Query 79550 TTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATTA----CAAAC 79605
|||| || || | || || | || || | ||| || | | || |
Sbjct 3217 CGACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTCCCTCGTTCATGTCCACAA 3276
Query 79606 ATGTTC--AACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 79663
||||| | || | |||||||| ||||| || || |||| | | | ||||
Sbjct 3277 ATGTTGGGAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCATCTGGTGCAGAGTATT 3336
Query 79664 GTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCT 79723
| ||||| ||||| || || | |||||| || | || | ||| || ||||
Sbjct 3337 CGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCT 3396
Query 79724 TTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTA 79783
| || || || |||||||| ||||| ||||| || | || || || | |||| || |
Sbjct 3397 TCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGA 3456
Query 79784 TAATCGCTTTCCAGACGACTCGAGCCTTTATTATA----GACTTGTATCTCTTTTCTCTT 79839
||| | | ||| | | | || || || | ||| | || || ||||| |
Sbjct 3457 GAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTTTTGCGACCTCTACCTTCCTTCTCAT 3516
Query 79840 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899
| | ||| | |||||| || || || | ||||| | || ||||| |||
Sbjct 3517 AACTCTC----ATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCAACCCAGGGCAT 3572
Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGAT 79957
|||| |||||||||| | ||| ||||| | || ||| || || |||||||||||||
Sbjct 3573 TCGTTGGGACACATCAGTGTCCAGTCTCCGT--TCTTTTCGACACGCTTCATAAAGAGAT 3630
Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017
| |||||||| | ||| || ||||| | || | || || || || ||||
Sbjct 3631 CCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCT 3690
Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077
|| || || || ||| | | || || | ||||| || || | ||| || || |
Sbjct 3691 TTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATG 3750
Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137
| || || || |||||||| ||||| || | ||||| || || || || |||||| |
Sbjct 3751 CACCAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTA 3810
Query 80138 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197
||| || | |||||||||||| |||||||||| |||| || ||| ||| | ||||
Sbjct 3811 GCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCAC 3870
Query 80198 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT- 80256
| || | ||| ||||| || || || || |||| || || | || || |||
Sbjct 3871 GGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACA-CGTC 3929
Query 80257 TTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316
|| | ||||| || || || || || ||||| || |||||| || || || ||
Sbjct 3930 TTGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGAT 3989
Query 80317 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 80376
|| | ||| | || || || || | ||||| || ||||| || || ||
Sbjct 3990 GAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTAT 4049
Query 80377 TTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCC 80435
|| | |||| | ||||| |||||||| || || ||||| || | ||||| ||
Sbjct 4050 TTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCG-TGAATACC 4108
Query 80436 TACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471
|| || |||||||| | ||| || || || | |||
Sbjct 4109 AACGGCAACACGCATGATCATTTGTTGTGGACGTTC 4144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718234008855000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |