Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq485 84.2 2e-11
>seq485
Length=41282
Score = 84.2 bits (92), Expect = 2e-11
Identities = 128/180 (71%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 13696 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13755
|| || || || || || || | || | |||||| || ||||| || | ||| || ||
Sbjct 7124 ATGAGCTCATTGGAGAAAGTGAGACCAGCCATCAAGCCACGTTTCTTGAGCCAGAAGATA 7065
Query 13756 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCT 13815
| ||||||||||| ||||| ||||| ||||| |||||||| || | ||| ||||
Sbjct 7064 GAGGCGAATGATCCACTGAAGAAAATTCCTTCAACAGCAGCAAAAGCAACTAGGCGTTGA 7005
Query 13816 CCAAACGATGCTTTTTTGT-TTGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 13874
| || | | ||||||| |||| |||||| | |||||| |||| || || |||||
Sbjct 7004 GCGAAGGTAGAGTTTTTGTCTTGA-ATCCATCTGACAGCCCAGTCAGCCTTCTTCTTAAT 6946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478565618355000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |