Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq485 84.2 2e-11 >seq485 Length=41282 Score = 84.2 bits (92), Expect = 2e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 13696 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13755 || || || || || || || | || | |||||| || ||||| || | ||| || || Sbjct 7124 ATGAGCTCATTGGAGAAAGTGAGACCAGCCATCAAGCCACGTTTCTTGAGCCAGAAGATA 7065 Query 13756 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCT 13815 | ||||||||||| ||||| ||||| ||||| |||||||| || | ||| |||| Sbjct 7064 GAGGCGAATGATCCACTGAAGAAAATTCCTTCAACAGCAGCAAAAGCAACTAGGCGTTGA 7005 Query 13816 CCAAACGATGCTTTTTTGT-TTGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 13874 | || | | ||||||| |||| |||||| | |||||| |||| || || ||||| Sbjct 7004 GCGAAGGTAGAGTTTTTGTCTTGA-ATCCATCTGACAGCCCAGTCAGCCTTCTTCTTAAT 6946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478565618355000