Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq68 163 4e-35
>seq68
Length=8748
Score = 163 bits (180), Expect = 4e-35
Identities = 410/616 (67%), Gaps = 8/616 (1%)
Strand=Plus/Plus
Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002
|||||| || || || | ||| | || ||||| ||||| || |||||||||| ||
Sbjct 3533 TTCGAATTCATCGCCGTATACATCAGCCAACCCAGGGCATTCGTTGGGACACATCAGTGT 3592
Query 72003 CCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 72060
||| ||||| | || ||| || || |||||||||||||| |||||||| | |||
Sbjct 3593 CCAGTCTCCGT--TCTTTTCGACACGCTTCATAAAGAGATCCGGAATCCACAAAGCGTAG 3650
Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120
|| ||||| | || | || || || || |||||| || || || ||| |
Sbjct 3651 AAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTCGGAGGTCCAGAAACTCG 3710
Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180
| || || | ||||| || || | ||| || || | | || || || ||||||||
Sbjct 3711 AAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCACCAGGACGCTTGTTTCCA 3770
Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240
||||| || | ||||| || || || || |||||| | ||| || | ||||||||||
Sbjct 3771 CCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCATAGGCACAATACCATTG 3830
Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGA 72300
|| ||||||||| |||| || ||| ||| | ||||| || || ||| |||
Sbjct 3831 GAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGATTCTGTGAATGTTGAGA 3890
Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGATGCC 72359
|| || || || || |||| || || | || || ||| || | ||||| || || ||
Sbjct 3891 CCGATGCCACCGGCGTTTTTGGAAATCATAGCACA-CGTCTTGAGGGTATCGTAAATACC 3949
Query 72360 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419
|| |||||||| ||| |||||| || || || || || | ||| | ||
Sbjct 3950 ATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAAAGTTGAGCTTGTGGTGT 4009
Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479
|| || || | ||||| || ||||| || || |||| | |||| | |||||
Sbjct 4010 ACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTATTTATTGGACATCAAGTTGTA 4069
Query 72480 CGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAACA 72538
|||||||| || || ||||| || | || || || || || |||||||| | ||
Sbjct 4070 GGTCTCAATGGCACTCTCGATATCGTCACCG-TGAATACCAACGGCAACACGCATGATCA 4128
Query 72539 TATGCTGAGGTCTTTC 72554
| || || || | |||
Sbjct 4129 TTTGTTGTGGACGTTC 4144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671106691695000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |