Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq68 163 4e-35 >seq68 Length=8748 Score = 163 bits (180), Expect = 4e-35 Identities = 410/616 (67%), Gaps = 8/616 (1%) Strand=Plus/Plus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 |||||| || || || | ||| | || ||||| ||||| || |||||||||| || Sbjct 3533 TTCGAATTCATCGCCGTATACATCAGCCAACCCAGGGCATTCGTTGGGACACATCAGTGT 3592 Query 72003 CCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 72060 ||| ||||| | || ||| || || |||||||||||||| |||||||| | ||| Sbjct 3593 CCAGTCTCCGT--TCTTTTCGACACGCTTCATAAAGAGATCCGGAATCCACAAAGCGTAG 3650 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 || ||||| | || | || || || || |||||| || || || ||| | Sbjct 3651 AAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTCGGAGGTCCAGAAACTCG 3710 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | || || | ||||| || || | ||| || || | | || || || |||||||| Sbjct 3711 AAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCACCAGGACGCTTGTTTCCA 3770 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 ||||| || | ||||| || || || || |||||| | ||| || | |||||||||| Sbjct 3771 CCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCATAGGCACAATACCATTG 3830 Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGA 72300 || ||||||||| |||| || ||| ||| | ||||| || || ||| ||| Sbjct 3831 GAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGATTCTGTGAATGTTGAGA 3890 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGATGCC 72359 || || || || || |||| || || | || || ||| || | ||||| || || || Sbjct 3891 CCGATGCCACCGGCGTTTTTGGAAATCATAGCACA-CGTCTTGAGGGTATCGTAAATACC 3949 Query 72360 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419 || |||||||| ||| |||||| || || || || || | ||| | || Sbjct 3950 ATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAAAGTTGAGCTTGTGGTGT 4009 Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479 || || || | ||||| || ||||| || || |||| | |||| | ||||| Sbjct 4010 ACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTATTTATTGGACATCAAGTTGTA 4069 Query 72480 CGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 |||||||| || || ||||| || | || || || || || |||||||| | || Sbjct 4070 GGTCTCAATGGCACTCTCGATATCGTCACCG-TGAATACCAACGGCAACACGCATGATCA 4128 Query 72539 TATGCTGAGGTCTTTC 72554 | || || || | ||| Sbjct 4129 TTTGTTGTGGACGTTC 4144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671106691695000