Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3721 82.4 5e-11 >seq3721 Length=43933 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/216 (69%), Gaps = 14/216 (6%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTT-GGTCATC 33219 ||||| |||| ||||||||||||||| || ||||| || || | |||| || |||| Sbjct 40787 ACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGATA----GAGTACGGCCATC 40732 Query 33220 C---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT--- 33273 | | ||||| ||| ||| || | |||||||||||||| || || || || || Sbjct 40731 CTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATC 40672 Query 33274 TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 || | | ||| | ||||| | | || ||||| | | ||| |||| || || Sbjct 40671 TTGGATTTTCGAC---TTTACATTGTCGATGGTGTCTGACGACTCAACCTCCAATGTGAT 40615 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| ||||| || || ||||| |||||||| Sbjct 40614 GGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318762545229750