Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq3721 82.4 5e-11
>seq3721
Length=43933
Score = 82.4 bits (90), Expect = 5e-11
Identities = 150/216 (69%), Gaps = 14/216 (6%)
Strand=Plus/Minus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTT-GGTCATC 33219
||||| |||| ||||||||||||||| || ||||| || || | |||| || ||||
Sbjct 40787 ACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGATA----GAGTACGGCCATC 40732
Query 33220 C---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT--- 33273
| | ||||| ||| ||| || | |||||||||||||| || || || || ||
Sbjct 40731 CTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATC 40672
Query 33274 TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333
|| | | ||| | ||||| | | || ||||| | | ||| |||| || ||
Sbjct 40671 TTGGATTTTCGAC---TTTACATTGTCGATGGTGTCTGACGACTCAACCTCCAATGTGAT 40615
Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| ||||| || || ||||| ||||||||
Sbjct 40614 GGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318762545229750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |