Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq3755 105 2e-17
seq485 91.5 3e-13
>seq3755
Length=35748
Score = 105 bits (116), Expect = 2e-17
Identities = 165/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383
|| ||| ||| || | ||| | ||| || | || | || || || || || || ||
Sbjct 18280 TTCTTTCCTCCACCACGTAGACGAAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTG 18339
Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443
||||| || || || | || ||||| ||||| || || || || || | | ||||||
Sbjct 18340 TAGTCGGAAAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGA 18399
Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503
||||| || ||||| || || ||||| ||||| | || ||||| || | ||||||
Sbjct 18400 TCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAG 18459
Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| ||| ||||| || || || || ||||| || || || || || || ||||||||
Sbjct 18460 GATTCAACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 18515
>seq485
Length=41282
Score = 91.5 bits (100), Expect = 3e-13
Identities = 109/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 269136 TAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTT 269195
||||||||||||| ||||| ||||| || ||||| || || || ||| ||||||| |
Sbjct 7013 TAGTTGCTTTTGCTGCTGTTGAAGGAATTTTCTTCAGTGGATCATTCGCCTCTATCTTCT 7072
Query 269196 GGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGG 269255
|| | |||||| | ||| | ||| | || | |||||||| || || | || | | |
Sbjct 7073 GGCTCAAGAAACGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGAGCTCATCTCCCGTG 7132
Query 269256 ACGAAGGTTTACACTGCGACTTCGCTTG 269283
|||||||| | ||| ||||||||| ||
Sbjct 7133 ACGAAGGTCTTCACACCGACTTCGCATG 7160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151341234868500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |