Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3755 105 2e-17 seq485 91.5 3e-13 >seq3755 Length=35748 Score = 105 bits (116), Expect = 2e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 || ||| ||| || | ||| | ||| || | || | || || || || || || || Sbjct 18280 TTCTTTCCTCCACCACGTAGACGAAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTG 18339 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 ||||| || || || | || ||||| ||||| || || || || || | | |||||| Sbjct 18340 TAGTCGGAAAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGA 18399 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 ||||| || ||||| || || ||||| ||||| | || ||||| || | |||||| Sbjct 18400 TCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAG 18459 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||| ||||| || || || || ||||| || || || || || || |||||||| Sbjct 18460 GATTCAACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 18515 >seq485 Length=41282 Score = 91.5 bits (100), Expect = 3e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 269136 TAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTT 269195 ||||||||||||| ||||| ||||| || ||||| || || || ||| ||||||| | Sbjct 7013 TAGTTGCTTTTGCTGCTGTTGAAGGAATTTTCTTCAGTGGATCATTCGCCTCTATCTTCT 7072 Query 269196 GGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGG 269255 || | |||||| | ||| | ||| | || | |||||||| || || | || | | | Sbjct 7073 GGCTCAAGAAACGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGAGCTCATCTCCCGTG 7132 Query 269256 ACGAAGGTTTACACTGCGACTTCGCTTG 269283 |||||||| | ||| ||||||||| || Sbjct 7133 ACGAAGGTCTTCACACCGACTTCGCATG 7160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151341234868500