Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq438 91.5 1e-13 >seq438 Length=27325 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 5345 TCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATTG 5404 || |||| ||| || ||||| ||| ||| |||| ||||||||| | |||| || | Sbjct 192 TCGCCCTCCTTCACTTCAAAATCGTTGTCTCCGTGGTTAAACAGTAACACCTTCACCTGC 133 Query 5405 CCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGG 5464 || || || || | ||||| ||||| |||||| |||||| | |||||| || || Sbjct 132 CCCCGATAATCCGCATCGATCACGCCCGCGCCCGTGTCGATCATATGTTTGGATGCGAGC 73 Query 5465 CCGGAACGTGGTGCTATGCGTCCGT 5489 ||||| || ||||||||||| |||| Sbjct 72 CCGGAGCGGGGTGCTATGCGGCCGT 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447728712090000