Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq438 91.5 1e-13
>seq438
Length=27325
Score = 91.5 bits (100), Expect = 1e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 5345 TCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATTG 5404
|| |||| ||| || ||||| ||| ||| |||| ||||||||| | |||| || |
Sbjct 192 TCGCCCTCCTTCACTTCAAAATCGTTGTCTCCGTGGTTAAACAGTAACACCTTCACCTGC 133
Query 5405 CCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGG 5464
|| || || || | ||||| ||||| |||||| |||||| | |||||| || ||
Sbjct 132 CCCCGATAATCCGCATCGATCACGCCCGCGCCCGTGTCGATCATATGTTTGGATGCGAGC 73
Query 5465 CCGGAACGTGGTGCTATGCGTCCGT 5489
||||| || ||||||||||| ||||
Sbjct 72 CCGGAGCGGGGTGCTATGCGGCCGT 48
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447728712090000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |