Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq3755 95.1 1e-14
seq3721 95.1 1e-14
seq2887 82.4 7e-11
>seq3755
Length=35748
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||||||| | ||| || |||||||| | ||| || ||| | ||| ||| ||
Sbjct 18307 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 18366
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|| || || ||| | ||||| || | ||| ||||| || ||||| || || ||||| |
Sbjct 18367 AGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGGAATTCCCTCCTTGTCCTGG 18426
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || | |||||| | ||| || |||| | || || || | |||||||||||
Sbjct 18427 ATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTA 18486
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
|| || || || || || ||||||||||||
Sbjct 18487 CCCGTGAGGGTCTTGACGAAGATCTGCATG 18516
>seq3721
Length=43933
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||||| ||| ||||| || | ||||||||| || || || ||||||
Sbjct 41016 CACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCAGACAGTGTTCTGCCATCCTC 40957
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| ||| ||||| | ||||| |||| || || || || || ||||| || ||||| |
Sbjct 40956 CAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTG 40897
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| |||| ||||||| | | || || | || || || | ||| ||||| ||
Sbjct 40896 GATCTTTGACTTGACGTTATCAATGGTATCCGAAGATTCCACTTCCAACGTAATGGTCTT 40837
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || | ||| || || |||||||||||
Sbjct 40836 TCCGGTCAAAGTCTTGACGAAGATCTGCAT 40807
>seq2887
Length=18503
Score = 82.4 bits (90), Expect = 7e-11
Identities = 125/178 (70%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 68442 GTCATTCTAGACGGAAAAGCGTGCGGGTTTATGATAAGATCAGGAACCACTCCGTCTTTA 68501
||||| | ||| |||| |||||||||||| ||||||||||||||||| | || | ||
Sbjct 9951 GTCATACGAGAAGGAATAGCGTGCGGGTTGATGATAAGATCAGGAACAATGCCTTGACTA 10010
Query 68502 TCAAAGGGCATGTCTTCTTGCGATTTCACGGCGCCGCATGTTCCTTTTTGCGCGGTAAAC 68561
|| |||||||||| |||| | | ||| || || ||||| || |
Sbjct 10011 GTGAATGGCATGTCTTGTTGCATATATGTGATACCGATAGTACCCTTTTGTCCGTGACGA 10070
Query 68562 GAGGCAAATTTATCACCCATTTCAGGTATCCTGGGGGTCCGCAATCTCACTTTGACGA 68619
|| ||||| || ||||| |||| ||| ||| ||| |||| || | ||||||||||
Sbjct 10071 GAAGCAAACTTGTCACCGATTTGAGGAATCTTGGTAGTCCTCATGCGGACTTTGACGA 10128
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448269485895000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |