Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3755 95.1 1e-14 seq3721 95.1 1e-14 seq2887 82.4 7e-11 >seq3755 Length=35748 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||| || |||||||| | ||| || ||| | ||| ||| || Sbjct 18307 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 18366 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || || ||| | ||||| || | ||| ||||| || ||||| || || ||||| | Sbjct 18367 AGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGGAATTCCCTCCTTGTCCTGG 18426 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || | |||||| | ||| || |||| | || || || | ||||||||||| Sbjct 18427 ATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTA 18486 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || |||||||||||| Sbjct 18487 CCCGTGAGGGTCTTGACGAAGATCTGCATG 18516 >seq3721 Length=43933 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||| ||| ||||| || | ||||||||| || || || |||||| Sbjct 41016 CACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCAGACAGTGTTCTGCCATCCTC 40957 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| ||||| | ||||| |||| || || || || || ||||| || ||||| | Sbjct 40956 CAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTG 40897 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || |||| ||||||| | | || || | || || || | ||| ||||| || Sbjct 40896 GATCTTTGACTTGACGTTATCAATGGTATCCGAAGATTCCACTTCCAACGTAATGGTCTT 40837 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | ||| || || ||||||||||| Sbjct 40836 TCCGGTCAAAGTCTTGACGAAGATCTGCAT 40807 >seq2887 Length=18503 Score = 82.4 bits (90), Expect = 7e-11 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 68442 GTCATTCTAGACGGAAAAGCGTGCGGGTTTATGATAAGATCAGGAACCACTCCGTCTTTA 68501 ||||| | ||| |||| |||||||||||| ||||||||||||||||| | || | || Sbjct 9951 GTCATACGAGAAGGAATAGCGTGCGGGTTGATGATAAGATCAGGAACAATGCCTTGACTA 10010 Query 68502 TCAAAGGGCATGTCTTCTTGCGATTTCACGGCGCCGCATGTTCCTTTTTGCGCGGTAAAC 68561 || |||||||||| |||| | | ||| || || ||||| || | Sbjct 10011 GTGAATGGCATGTCTTGTTGCATATATGTGATACCGATAGTACCCTTTTGTCCGTGACGA 10070 Query 68562 GAGGCAAATTTATCACCCATTTCAGGTATCCTGGGGGTCCGCAATCTCACTTTGACGA 68619 || ||||| || ||||| |||| ||| ||| ||| |||| || | |||||||||| Sbjct 10071 GAAGCAAACTTGTCACCGATTTGAGGAATCTTGGTAGTCCTCATGCGGACTTTGACGA 10128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448269485895000