Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq68 221 2e-52 seq485 107 2e-18 >seq68 Length=8748 Score = 221 bits (244), Expect = 2e-52 Identities = 1126/1774 (63%), Gaps = 31/1774 (2%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||||||||| || |||||||| | | ||||| || ||||||||||| || || ||| Sbjct 2382 GTGAATTGAATCGGTGCGGATGCAGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 2441 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || || |||| ||| ||||||||| ||| | ||| | || ||| ||| Sbjct 2442 CCTAGTTTCCAACCGGCAAAATGCATGGACGTAATCTTGCCCATGGTGGGGTCTTTCATA 2501 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || || ||||| ||||| ||||| | ||| || || | ||| || ||||||| | Sbjct 2502 TGAATGTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGCGGCCATTTGAACA 2561 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| | Sbjct 2562 ATTGTTCGTTGGGAAATCTCCCACACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 2621 Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 || | | ||||| || || || || || || || || | ||||| || | || | Sbjct 2622 TTGGGGATGTTCTGGATTGAACCGCCGTCAGCAATGATGCGGTTCTTCATGTTGTCTGAC 2681 Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351 || ||| | ||| | | | | || || || ||||| ||||| ||||| || Sbjct 2682 CACAATCCCATGTCGACAAGATCCTTGAGAAGCCATGGGTTAACGACTTGGAATTCCCCT 2741 Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411 | || || | |||| ||| || ||| || || ||||| | |||||||| || Sbjct 2742 GCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACACTCATTAAAACCG 2801 Query 62412 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62471 | ||| |||| || || || |||||||| || || | ||||| || | | |||| Sbjct 2802 AGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACTGTTGCGGACACCG 2861 Query 62472 TATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNNN 62530 ||| | |||| || | || || | ||||| | |||||| || | ||| || Sbjct 2862 TATTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTGACTCC 2920 Query 62531 NNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGG 62590 ||| || || || | | || ||| | || || || || | Sbjct 2921 CCACATATCGTATTGAAGTTCGCCTTTTGAGACAGGTGAGCCTTCGTAAGTCTCATAGGT 2980 Query 62591 TCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAA 62650 || || || ||| | ||| | | | |||||| ||| ||||| || ||||| Sbjct 2981 ACCCAGCTCCTTAGCAATCTCAACAGAAGACGTCAATGCAGCGTGGTAAATAGTCTCGAA 3040 Query 62651 GATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAGAG--AAT 62707 ||| | || || | | ||||| ||| | |||||||| ||| ||||| || Sbjct 3041 GATTTGAACGTTGAGGTGCTTAGCTTC-AGGTGACTCAAATGG-TAAACGAAGAGCCAAG 3098 Query 62708 AAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62767 ||| || || || | ||||| ||||| | | ||||||| | || | ||| | | Sbjct 3099 AAA-GCATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGTGACGGAAATT-GCTCT 3156 Query 62768 TTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 62826 ||| | ||||| | | || || || || || || || || || || | || ||||||| Sbjct 3157 TTCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTCCTGACAA 3216 Query 62827 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TACAAAC 62882 |||| || || | || || | || || | || | | | || | || | Sbjct 3217 CGACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTCCCTCGTTCATGTCCACAA 3276 Query 62883 ATGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 62940 ||||| || |||| |||||||| ||||| || || |||| | | | |||| Sbjct 3277 ATGTTGGGAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCATCTGGTGCAGAGTATT 3336 Query 62941 GTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCT 63000 | || || ||||| ||||| | || || || | || | ||| || |||| Sbjct 3337 CGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCT 3396 Query 63001 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 63060 | || || || |||||||| ||||| |||||||| | || || || | |||| || | Sbjct 3397 TCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGA 3456 Query 63061 TAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTA---TCTCCTTTCTCTTT 63117 ||| | | ||| | | | || || || | |||| ||| | ||| | | Sbjct 3457 GAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---TTTGCGACCTCTACCTTCCTTCT 3513 Query 63118 CGTATAGTGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACAT 63176 | || | | | ||| | |||||| || || || | |||| |||| ||||| ||| Sbjct 3514 CATA-ACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCAACCCAGGGCAT 3572 Query 63177 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 63236 || | |||||||||| | ||| ||||||| | | || || |||||||||||||| Sbjct 3573 TCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCC 3632 Query 63237 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 63296 |||||||| | ||| || ||||| | || | ||| || || || |||||| Sbjct 3633 GGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTT 3692 Query 63297 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 63356 || || || ||| | | || || | ||||| || || | ||| || || | | Sbjct 3693 CGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCA 3752 Query 63357 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63416 ||||| || |||||||| ||||| || | ||||| || || || || |||||| | | Sbjct 3753 CCAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGC 3812 Query 63417 ATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGA 63476 || || | |||||| || || ||||||||||||||| || ||| ||| | ||||| Sbjct 3813 ATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGG 3872 Query 63477 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TT 63535 || | ||| ||||| || || || || |||| || || | || || ||| || Sbjct 3873 ATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACA-CGTCTT 3931 Query 63536 TAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGA 63595 | || || || ||||| || || ||||| || |||||| || || || || || Sbjct 3932 GAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGATGA 3991 Query 63596 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 63655 | ||| | || || || || | ||||| || ||||| || || |||| Sbjct 3992 AAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTATTT 4051 Query 63656 TTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTA 63714 | || | | ||||| |||||||| || || ||||| || | ||||| || | Sbjct 4052 ATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCG-TGAATACCAA 4110 Query 63715 CTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 | || |||||||| | ||| || || || | ||| Sbjct 4111 CGGCAACACGCATGATCATTTGTTGTGGACGTTC 4144 >seq485 Length=41282 Score = 107 bits (118), Expect = 2e-18 Identities = 293/449 (65%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 |||||| || || ||||| ||||| || | || ||||| || || || || ||| | Sbjct 7464 CATAACACCAGCCTTCTGGTAGTCACCGACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 7405 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 33119 | || || || |||||||| || || || |||| | || || | || | || Sbjct 7404 TAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGCAGATTTGTACACCTTGTCGTTACC 7345 Query 33120 CAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33179 | || | | | || |||||||| || || ||| ||||||| | | || Sbjct 7344 AAGAGCAACGAGGAGACGGTCTGCGACGAACTCGATGTATTGCTTCATCAAGTTCGAGTT 7285 Query 33180 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 33239 ||| || | ||| |||||||||| |||| | || ||||||||||| || || Sbjct 7284 CATGCCAAGAAGCGCGCATGGAAGAGCCTCAGTCAAGAACTCTTGTTCAATCTCAACAGC 7225 Query 33240 ATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACAT 33299 || || || | | | || | | | || || | ||| || || || | Sbjct 7224 CTCGGTGATGACATCTTGGACAGCCTGCTTGCTTGGGCGGTGCTTCAAGTGGGAGAAAAG 7165 Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 | |||||||| ||| ||| ||||| ||||| | || || || ||||| || || Sbjct 7164 GAGGCATGCGAAGTCGGTGTGAAGACCTTCGTCACGGGAGATGAGCTCATTGGAGAAAGT 7105 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||| || | ||| | |||||| || || ||||| || || || |||||||||||| || Sbjct 7104 GAGACCAGCCATCAAGCCACGTTTCTTGAGCCAGAAGATAGAGGCGAATGATCCACTGAA 7045 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAA 33448 ||| |||||||| || |||||||| |||| Sbjct 7044 GAAAATTCCTTCAACAGCAGCAAAAGCAA 7016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622917025995000