Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq3755 89.7 5e-13
seq3721 87.8 2e-12
>seq3755
Length=35748
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || || || | || || ||| | |||||| |||| | |||||
Sbjct 18515 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 18456
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|| |||||||| | ||||| ||||| ||||| || || || || || ||||||
Sbjct 18455 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAA 18396
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||| | | || | || |||||| ||||||||||||| | | | | |||||| |||
Sbjct 18395 CAACGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 18336
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| ||||| || || ||| | || |||||||
Sbjct 18335 ATCCAAAAGGAGTCCACTCTTCACTTGGTCCT 18304
>seq3721
Length=43933
Score = 87.8 bits (96), Expect = 2e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 26820 GAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCT 26879
||||| ||| |||||||| | ||||| ||||| || || || || || |||
Sbjct 40402 GAATCTTCCGATACCATCGACAATGTCAAGTCTAAGATCCAAGATAAGGAGGGCATTCCT 40461
Query 26880 CCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC 26939
|| || || ||| | || |||| || ||| |||||||||||||| | ||| | || |
Sbjct 40462 CCGGACCAGCAACGTCTGATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACCCTCTCC 40521
Query 26940 GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||| ||||| ||||| ||||||||| | || |||| ||
Sbjct 40522 GACTACAACATCCAAAAGGAATCTACTCTTCACTTGGTGCT 40562
Score = 84.2 bits (92), Expect = 2e-11
Identities = 124/176 (70%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 26805 ATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 26864
||||| |||| | || || | |||||||||||| | ||||| ||||| ||
Sbjct 40102 ATCACTCTCGAGGTTGAGTCCAGCGACACCATCGACAACGTCAAGAGCAAGATCCAGGAT 40161
Query 26865 AAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 26924
|| || || || || || || ||||| | | || | || ||||| || || |||||
Sbjct 40162 AAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAGCAGCTTGAAGAC 40221
Query 26925 GATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
| | | | | | |||||||| ||||| ||||| || |||||| ||||||| |||||
Sbjct 40222 GGTCGTACCTTGAGCGACTACAACATCCAAAAGGAGTCTACTCTCCATCTCGTCCT 40277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478639214790000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |