Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3755 89.7 5e-13 seq3721 87.8 2e-12 >seq3755 Length=35748 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || ||| | |||||| |||| | ||||| Sbjct 18515 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 18456 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | ||||| ||||| ||||| || || || || || |||||| Sbjct 18455 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAA 18396 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | || |||||| ||||||||||||| | | | | |||||| ||| Sbjct 18395 CAACGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 18336 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || ||| | || ||||||| Sbjct 18335 ATCCAAAAGGAGTCCACTCTTCACTTGGTCCT 18304 >seq3721 Length=43933 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 26820 GAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCT 26879 ||||| ||| |||||||| | ||||| ||||| || || || || || ||| Sbjct 40402 GAATCTTCCGATACCATCGACAATGTCAAGTCTAAGATCCAAGATAAGGAGGGCATTCCT 40461 Query 26880 CCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC 26939 || || || ||| | || |||| || ||| |||||||||||||| | ||| | || | Sbjct 40462 CCGGACCAGCAACGTCTGATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACCCTCTCC 40521 Query 26940 GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| ||||| ||||| ||||||||| | || |||| || Sbjct 40522 GACTACAACATCCAAAAGGAATCTACTCTTCACTTGGTGCT 40562 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 26805 ATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 26864 ||||| |||| | || || | |||||||||||| | ||||| ||||| || Sbjct 40102 ATCACTCTCGAGGTTGAGTCCAGCGACACCATCGACAACGTCAAGAGCAAGATCCAGGAT 40161 Query 26865 AAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 26924 || || || || || || || ||||| | | || | || ||||| || || ||||| Sbjct 40162 AAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAGCAGCTTGAAGAC 40221 Query 26925 GATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | | | | | | |||||||| ||||| ||||| || |||||| ||||||| ||||| Sbjct 40222 GGTCGTACCTTGAGCGACTACAACATCCAAAAGGAGTCTACTCTCCATCTCGTCCT 40277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478639214790000