Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq68 269 7e-67
seq1590 104 6e-17
>seq68
Length=8748
Score = 269 bits (298), Expect = 7e-67
Identities = 1153/1794 (64%), Gaps = 50/1794 (3%)
Strand=Plus/Minus
Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450
||||||| ||||| | ||| ||| ||||| ||| || |||| | ||| |||
Sbjct 4201 TTCGGATTCAAGACCCTCGAGCGATCATACCTTCTTCGACTCGATGGAAAGGTTGCAGAA 4142
Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510
|| || || || ||| | ||||||||||| ||||||| || | ||| | ||
Sbjct 4141 CGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGT 4082
Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCTCGTG-TA-TTCACGCACGCCACGCCAACAA 363568
|| ||||| || || || ||| | || | || ||||| |||||| | || |||
Sbjct 4081 GCCATTGAGACCTACAA-CTTG-ATGTCCAATAAATACTTCACCCACGCCTCCCCTACAC 4024
Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628
| | | ||||| || | | | || | || || ||||| || | | |||||||
Sbjct 4023 TTTTCTCCGCTGGTACACCACAAGCTCAACTTTCATCATGCTTCCTCATTGACATGAAGG 3964
Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688
| ||| ||||| ||||| | || || || |||| |||||| | |||||||| || |
Sbjct 3963 AGGATAGTATCGATGGTATTTACGATACCCTCAAGACGTGTGCTATGATTTCCAAAAACG 3904
Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGT---TACATTCGC 363744
| || || || ||| | || |||| | ||||| || | || |||||| |
Sbjct 3903 CCGGTGGCATCGGTCTCAACATTCACAGAATCCGTGCTACTG----GTGCCTACATTGCC 3848
Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804
|| || || |||| ||||| | || || ||||| || || || |||||||||||
Sbjct 3847 GGTACCAATGGTAACTCCAATGGTATTGTGCCTATGCTACGAGTTTTCAACAATACTGCG 3788
Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864
|| || || |||||||||||| ||||| || || ||||| || || || ||||||
Sbjct 3787 AGATATGTTGACCAGGGTGGAAACAAGCGTCCTGGTGCATTTGCAATCTACCTTGAGCCT 3728
Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924
|| || || |||| |||||||| || ||||| || ||| || || || ||| |
Sbjct 3727 TGGCACGCAGACGTTTTCGAGTTTCTGGACCTCCGAAAGAACCACGGTAAGGAAGAAGTC 3668
Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984
|| || |||||||| ||||| || | ||| || | || | ||||||||||| || ||
Sbjct 3667 CGCGCCCGTGATCTCTTCTACGCTTTGTGGATTCCGGATCTCTTTATGAAGCGTGTCGA- 3609
Query 363985 GCAGGTAAGA-ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATG 364043
|| || | ||| |||| | || || ||||||| || || | | |||||||
Sbjct 3608 AAAGAACGGAGACTGGACACTGATGTGTCCCAACGAATGCCCTGGGTTGGCTGATGTATA 3549
Query 364044 GGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGAC 364103
|| || || | | ||||| || || | ||||| ||| || | | ||| || ||
Sbjct 3548 CGGCGATGAATTCGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGCAAAAC 3489
Query 364104 AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACC 364163
|| || || ||||| |||| |||| | || | || | ||||| |||| ||
Sbjct 3488 CATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGAAACCC 3429
Query 364164 CTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223
| ||| | ||||| ||| | ||||| ||| |||||| || |||| || || ||
Sbjct 3428 ATTCATGCTTTACAAGGATGCATGCAATAAGAAGAGCAACCAAAAGAACCTCGGCACCAT 3369
Query 364224 TCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCG 364282
|| |||| ||| || || || || ||| | |||||| | || || || || |||
Sbjct 3368 TC-GCAGCTCCAATCTGTGCACAGAAATTGTCGAATACTCTGCACCAGATGAAGTTGCTT 3310
Query 364283 TATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG------TAAAAGATGGTACTTTTG 364336
|||||||| || || || || || || | |||| | || || || |||| |
Sbjct 3309 GCTGTAACCTGGCATCCATTGCTCTCCCAACATTTGTGGACATGAACGAGGGAACTTACG 3250
Query 364337 ACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG-CA--ATCTCG-ACAAGGTT 364392
|| ||| | ||| | || || || ||| | | ||| || | || | ||||| |
Sbjct 3249 ACTTCCAAAAGCTTCACGAGGTTAC---TCAAG-TCGTTGTCAGGAACTTGAACAAGATC 3194
Query 364393 ATCGACAAGAATTATTATCCAATTCCTGAAGCC-GAGCGTTCTAATATGCGTCATCGCCC 364451
|| |||| || || || || | | |||||| || | | ||| | ||||| || ||
Sbjct 3193 ATTGACATCAACTACTACCCCGTCCAAGAAGCCAGAAAGAGC-AATTTCCGTCACCGGCC 3135
Query 364452 GATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGA 364511
|| | | | ||||| || || || ||||| | ||| || || | |||||||
Sbjct 3134 TATCGCTGTCGGTGTCCAAGGTCTTGCTGATGCTTTCTTGGCTCTTCGTTTACCATTTGA 3075
Query 364512 TTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAAT 364571
|| ||||| ||| || || | ||||| || || || || || ||| |
Sbjct 3074 GTCACCTGAAGCTAAGCACCTCAACGTTCAAATCTTCGAGACTATTTACCACGCTGCATT 3015
Query 364572 GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCC 364631
||| |||| ||| | || || ||| | || ||||| || || || ||
Sbjct 3014 GACGTCTTCTGTTGAGATTGCTAAGGAGCTGGGTACCTATGAGACTTACGAAGGCTCACC 2955
Query 364632 TCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAA 364691
| | || | || || | || | ||| | ||| ||||| || | | || ||| |
Sbjct 2954 TGTCTCAAAAGGCGAACTTCAATACGATATGTGGGGAGTCACACCTACCGACCTTTGGGA 2895
Query 364692 CTGGGATACGCT--ACG--TTCCAACGTTAAGAAGCATGGTACTCGCAAC---TCCCTCG 364744
|||||||| ||| | | |||| | || | | ||| |||||| | ||||
Sbjct 2894 CTGGGATA-GCTTGAAGAAATCCA---TCAAACAATACGGTGTCCGCAACAGTTTGCTCG 2839
Query 364745 TTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCG 364804
|| || || ||||| || || ||| | ||||| ||||| || ||||| ||||
Sbjct 2838 TT---GCCCCTATGCCAACAGCCAGTACCTCTCAGATTCTCGGTTTTAATGAGTGTTTCG 2782
Query 364805 AACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTA 364864
|||| | ||| || | || || || || || | | || ||||| | || ||||
Sbjct 2781 AACCATACACATCTAACATCTACTCTCGTCGTGTCTTAGCAGGGGAATTCCAAGTCGTTA 2722
Query 364865 ATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACT 364924
| | || ||||||||||| |||| || ||||| |||| ||||||||||
Sbjct 2721 ACCCATGGCTTCTCAAGGATCTTGTCGACATGGGATTGTGGTCAGACAACATGAAGAACC 2662
Query 364925 ATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGC 364984
||||| || | ||||| | |||||||| || |||||| || | |||
Sbjct 2661 GCATCATTGCTGACGGCGGTTCAATCCAGAACATCCCCAACATTCCAGCTGACATCAAGG 2602
Query 364985 CTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATC 365044
| ||||||| ||||| ||||| |||||| ||||| | || | ||||| || || |
Sbjct 2601 CACTTTACAAGACCGTGTGGGAGATTTCCCAACGAACAATTGTTCAAATGGCCGCTGACC 2542
Query 365045 GCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTC--ATGACTCAGCCAACCTC 365102
| |||||||| | |||| || || | ||| |||| |||| | || |||
Sbjct 2541 GTGGTGCTTTCGTTGATCAGTCGCAATCAATGAAC--ATTCATATGAAAGACCCCACCAT 2484
Query 365103 CGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
| |||| |||| ||||||||||| ||| |||||| ||||| ||||| ||
Sbjct 2483 GGGCAAGATTACGTCCATGCATTTTGCCGGTTGGAAACTAGGTCTCAAGACCGG 2430
>seq1590
Length=53781
Score = 104 bits (114), Expect = 6e-17
Identities = 103/129 (80%), Gaps = 6/129 (5%)
Strand=Plus/Plus
Query 111420 GTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTG-GTCTTGTCGA 111478
|| || ||||||||||| |||||||| ||||| || |||| ||| | | |||| | |
Sbjct 23449 GTGAAGATTTGGGATGGCAATGGATCCCGTGAATTCTTAGA--CAGCAGAGGCTTGAC-A 23505
Query 111479 CAACG--AAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536
|| || ||| |||||||| || ||||| ||||||||||||||||| || ||||| |||
Sbjct 23506 CATCGGGAAGTTGGTGATCTTGGGCCAGTCTACGGATTTCAATGGCGACATTTTGGCGCA 23565
Query 111537 GACTACAAA 111545
|||||||||
Sbjct 23566 GACTACAAA 23574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303288890530250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |