Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq68 269 7e-67 seq1590 104 6e-17 >seq68 Length=8748 Score = 269 bits (298), Expect = 7e-67 Identities = 1153/1794 (64%), Gaps = 50/1794 (3%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||||| ||||| | ||| ||| ||||| ||| || |||| | ||| ||| Sbjct 4201 TTCGGATTCAAGACCCTCGAGCGATCATACCTTCTTCGACTCGATGGAAAGGTTGCAGAA 4142 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || || || || ||| | ||||||||||| ||||||| || | ||| | || Sbjct 4141 CGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGT 4082 Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCTCGTG-TA-TTCACGCACGCCACGCCAACAA 363568 || ||||| || || || ||| | || | || ||||| |||||| | || ||| Sbjct 4081 GCCATTGAGACCTACAA-CTTG-ATGTCCAATAAATACTTCACCCACGCCTCCCCTACAC 4024 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | | ||||| || | | | || | || || ||||| || | | ||||||| Sbjct 4023 TTTTCTCCGCTGGTACACCACAAGCTCAACTTTCATCATGCTTCCTCATTGACATGAAGG 3964 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | ||| ||||| ||||| | || || || |||| |||||| | |||||||| || | Sbjct 3963 AGGATAGTATCGATGGTATTTACGATACCCTCAAGACGTGTGCTATGATTTCCAAAAACG 3904 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGT---TACATTCGC 363744 | || || || ||| | || |||| | ||||| || | || |||||| | Sbjct 3903 CCGGTGGCATCGGTCTCAACATTCACAGAATCCGTGCTACTG----GTGCCTACATTGCC 3848 Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 || || || |||| ||||| | || || ||||| || || || ||||||||||| Sbjct 3847 GGTACCAATGGTAACTCCAATGGTATTGTGCCTATGCTACGAGTTTTCAACAATACTGCG 3788 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 || || || |||||||||||| ||||| || || ||||| || || || |||||| Sbjct 3787 AGATATGTTGACCAGGGTGGAAACAAGCGTCCTGGTGCATTTGCAATCTACCTTGAGCCT 3728 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924 || || || |||| |||||||| || ||||| || ||| || || || ||| | Sbjct 3727 TGGCACGCAGACGTTTTCGAGTTTCTGGACCTCCGAAAGAACCACGGTAAGGAAGAAGTC 3668 Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 || || |||||||| ||||| || | ||| || | || | ||||||||||| || || Sbjct 3667 CGCGCCCGTGATCTCTTCTACGCTTTGTGGATTCCGGATCTCTTTATGAAGCGTGTCGA- 3609 Query 363985 GCAGGTAAGA-ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATG 364043 || || | ||| |||| | || || ||||||| || || | | ||||||| Sbjct 3608 AAAGAACGGAGACTGGACACTGATGTGTCCCAACGAATGCCCTGGGTTGGCTGATGTATA 3549 Query 364044 GGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGAC 364103 || || || | | ||||| || || | ||||| ||| || | | ||| || || Sbjct 3548 CGGCGATGAATTCGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGCAAAAC 3489 Query 364104 AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACC 364163 || || || ||||| |||| |||| | || | || | ||||| |||| || Sbjct 3488 CATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGAAACCC 3429 Query 364164 CTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 | ||| | ||||| ||| | ||||| ||| |||||| || |||| || || || Sbjct 3428 ATTCATGCTTTACAAGGATGCATGCAATAAGAAGAGCAACCAAAAGAACCTCGGCACCAT 3369 Query 364224 TCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCG 364282 || |||| ||| || || || || ||| | |||||| | || || || || ||| Sbjct 3368 TC-GCAGCTCCAATCTGTGCACAGAAATTGTCGAATACTCTGCACCAGATGAAGTTGCTT 3310 Query 364283 TATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG------TAAAAGATGGTACTTTTG 364336 |||||||| || || || || || || | |||| | || || || |||| | Sbjct 3309 GCTGTAACCTGGCATCCATTGCTCTCCCAACATTTGTGGACATGAACGAGGGAACTTACG 3250 Query 364337 ACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG-CA--ATCTCG-ACAAGGTT 364392 || ||| | ||| | || || || ||| | | ||| || | || | ||||| | Sbjct 3249 ACTTCCAAAAGCTTCACGAGGTTAC---TCAAG-TCGTTGTCAGGAACTTGAACAAGATC 3194 Query 364393 ATCGACAAGAATTATTATCCAATTCCTGAAGCC-GAGCGTTCTAATATGCGTCATCGCCC 364451 || |||| || || || || | | |||||| || | | ||| | ||||| || || Sbjct 3193 ATTGACATCAACTACTACCCCGTCCAAGAAGCCAGAAAGAGC-AATTTCCGTCACCGGCC 3135 Query 364452 GATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGA 364511 || | | | ||||| || || || ||||| | ||| || || | ||||||| Sbjct 3134 TATCGCTGTCGGTGTCCAAGGTCTTGCTGATGCTTTCTTGGCTCTTCGTTTACCATTTGA 3075 Query 364512 TTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAAT 364571 || ||||| ||| || || | ||||| || || || || || ||| | Sbjct 3074 GTCACCTGAAGCTAAGCACCTCAACGTTCAAATCTTCGAGACTATTTACCACGCTGCATT 3015 Query 364572 GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCC 364631 ||| |||| ||| | || || ||| | || ||||| || || || || Sbjct 3014 GACGTCTTCTGTTGAGATTGCTAAGGAGCTGGGTACCTATGAGACTTACGAAGGCTCACC 2955 Query 364632 TCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAA 364691 | | || | || || | || | ||| | ||| ||||| || | | || ||| | Sbjct 2954 TGTCTCAAAAGGCGAACTTCAATACGATATGTGGGGAGTCACACCTACCGACCTTTGGGA 2895 Query 364692 CTGGGATACGCT--ACG--TTCCAACGTTAAGAAGCATGGTACTCGCAAC---TCCCTCG 364744 |||||||| ||| | | |||| | || | | ||| |||||| | |||| Sbjct 2894 CTGGGATA-GCTTGAAGAAATCCA---TCAAACAATACGGTGTCCGCAACAGTTTGCTCG 2839 Query 364745 TTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCG 364804 || || || ||||| || || ||| | ||||| ||||| || ||||| |||| Sbjct 2838 TT---GCCCCTATGCCAACAGCCAGTACCTCTCAGATTCTCGGTTTTAATGAGTGTTTCG 2782 Query 364805 AACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTA 364864 |||| | ||| || | || || || || || | | || ||||| | || |||| Sbjct 2781 AACCATACACATCTAACATCTACTCTCGTCGTGTCTTAGCAGGGGAATTCCAAGTCGTTA 2722 Query 364865 ATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACT 364924 | | || ||||||||||| |||| || ||||| |||| |||||||||| Sbjct 2721 ACCCATGGCTTCTCAAGGATCTTGTCGACATGGGATTGTGGTCAGACAACATGAAGAACC 2662 Query 364925 ATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGC 364984 ||||| || | ||||| | |||||||| || |||||| || | ||| Sbjct 2661 GCATCATTGCTGACGGCGGTTCAATCCAGAACATCCCCAACATTCCAGCTGACATCAAGG 2602 Query 364985 CTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATC 365044 | ||||||| ||||| ||||| |||||| ||||| | || | ||||| || || | Sbjct 2601 CACTTTACAAGACCGTGTGGGAGATTTCCCAACGAACAATTGTTCAAATGGCCGCTGACC 2542 Query 365045 GCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTC--ATGACTCAGCCAACCTC 365102 | |||||||| | |||| || || | ||| |||| |||| | || ||| Sbjct 2541 GTGGTGCTTTCGTTGATCAGTCGCAATCAATGAAC--ATTCATATGAAAGACCCCACCAT 2484 Query 365103 CGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | |||| |||| ||||||||||| ||| |||||| ||||| ||||| || Sbjct 2483 GGGCAAGATTACGTCCATGCATTTTGCCGGTTGGAAACTAGGTCTCAAGACCGG 2430 >seq1590 Length=53781 Score = 104 bits (114), Expect = 6e-17 Identities = 103/129 (80%), Gaps = 6/129 (5%) Strand=Plus/Plus Query 111420 GTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTG-GTCTTGTCGA 111478 || || ||||||||||| |||||||| ||||| || |||| ||| | | |||| | | Sbjct 23449 GTGAAGATTTGGGATGGCAATGGATCCCGTGAATTCTTAGA--CAGCAGAGGCTTGAC-A 23505 Query 111479 CAACG--AAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536 || || ||| |||||||| || ||||| ||||||||||||||||| || ||||| ||| Sbjct 23506 CATCGGGAAGTTGGTGATCTTGGGCCAGTCTACGGATTTCAATGGCGACATTTTGGCGCA 23565 Query 111537 GACTACAAA 111545 ||||||||| Sbjct 23566 GACTACAAA 23574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303288890530250