Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq68 246 4e-60 seq485 105 8e-18 >seq68 Length=8748 Score = 246 bits (272), Expect = 4e-60 Identities = 1302/2056 (63%), Gaps = 31/2056 (2%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||||||||| || |||||||| | | ||||| || ||||||||||| || || ||| Sbjct 2382 GTGAATTGAATCGGTGCGGATGCAGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 2441 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || || |||| ||| ||||||||| ||| | ||| | || ||| ||| Sbjct 2442 CCTAGTTTCCAACCGGCAAAATGCATGGACGTAATCTTGCCCATGGTGGGGTCTTTCATA 2501 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || || ||||| ||||| ||||| | ||| || || | ||| || ||||||| | | Sbjct 2502 TGAATGTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGCGGCCATTTGAACA 2561 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| | Sbjct 2562 ATTGTTCGTTGGGAAATCTCCCACACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 2621 Query 62090 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146 || | | ||||| || || || || || || || || | ||||| || | || | Sbjct 2622 TTGGGGATGTTCTGGATTGAACCGCCGTCAGCAATGATGCGGTTCTTCATGTTGTCTGAC 2681 Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206 || ||| | ||| | | | | || || || ||||| ||||| ||||| || Sbjct 2682 CACAATCCCATGTCGACAAGATCCTTGAGAAGCCATGGGTTAACGACTTGGAATTCCCCT 2741 Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266 | || || | |||| ||| || ||| || || ||||| | | |||||||| || Sbjct 2742 GCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACACTCATTAAAACCG 2801 Query 62267 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62326 | ||| |||| || || || |||||||| || || | ||||| || | | |||| Sbjct 2802 AGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACTGTTGCGGACACCG 2861 Query 62327 TATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNNN 62385 ||| | |||| || | || || | ||||| | |||||| || | ||| || Sbjct 2862 TATTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTGACTCC 2920 Query 62386 NNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGG 62445 ||| || || || | | || ||| | || || || || | Sbjct 2921 CCACATATCGTATTGAAGTTCGCCTTTTGAGACAGGTGAGCCTTCGTAAGTCTCATAGGT 2980 Query 62446 TCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAA 62505 || || || ||| | ||| | | | |||||| ||| ||||| || ||||| Sbjct 2981 ACCCAGCTCCTTAGCAATCTCAACAGAAGACGTCAATGCAGCGTGGTAAATAGTCTCGAA 3040 Query 62506 GATCTTCTTATTTAGATCTTGCGCTTCCAGGCTA-TCAAATGGATAATTTAAGAG--AAT 62562 ||| | || || | | ||||| ||| | |||||||| ||| ||||| || Sbjct 3041 GATTTGAACGTTGAGGTGCTTAGCTTC-AGGTGACTCAAATGG-TAAACGAAGAGCCAAG 3098 Query 62563 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62622 ||| || || || | ||||| ||||| | | ||||||| | || | ||| | | Sbjct 3099 AAA-GCATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGTGACGGAAATT-GCTCT 3156 Query 62623 TTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 62681 ||| | ||||| | | || || || || || || || || || || | || ||||||| Sbjct 3157 TTCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTCCTGACAA 3216 Query 62682 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TACAAAC 62737 |||| || || | || || | || || | || | | | || | || | Sbjct 3217 CGACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTCCCTCGTTCATGTCCACAA 3276 Query 62738 ATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 62795 ||||| | |||| |||||||| ||||| || || |||| | | | |||| Sbjct 3277 ATGTTGGGAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCATCTGGTGCAGAGTATT 3336 Query 62796 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 62855 | || || ||||| ||||| | ||||| || | || | ||| || |||| Sbjct 3337 CGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCT 3396 Query 62856 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 62915 | || || || |||||||| ||||| |||||||| | || || || | |||| || | Sbjct 3397 TCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGA 3456 Query 62916 TAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGT-ATCTCTTTTCTCTTTCG 62974 ||| | | ||| | | | || || || | |||| | |||| || ||| Sbjct 3457 GAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---TTTGCGACCTCTACCTTCCTTCT 3513 Query 62975 TATAG-TGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATT 63032 ||| | | ||| | |||||| || || || | |||| ||| ||||| |||| Sbjct 3514 CATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCAACCCAGGGCATT 3573 Query 63033 CATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAG 63092 | | |||||||||| | ||| ||||||| | | || || |||||||||||||| | Sbjct 3574 CGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCG 3633 Query 63093 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 63152 ||||||| | ||| || ||||| | || | ||| || || || |||||| Sbjct 3634 GAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTC 3693 Query 63153 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63212 || || || ||| | | || || | ||||| || || | ||| || || | | | Sbjct 3694 GGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCAC 3753 Query 63213 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63272 |||| || |||||||| ||||| || | ||||| || || || || |||||| | || Sbjct 3754 CAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCA 3813 Query 63273 TTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAA 63332 | || | |||||||||||| |||||||||| || | || ||| ||| | ||||| | Sbjct 3814 TAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGA 3873 Query 63333 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTT 63391 | | ||| ||||| || || || || |||| || || | || || ||| || Sbjct 3874 TTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACA-CGTCTTG 3932 Query 63392 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 63451 | ||||| || || || || |||||||| ||| |||||| || || || || || Sbjct 3933 AGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAA 3992 Query 63452 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTT 63511 | ||| | || || || || | ||||| || ||||| || || |||| Sbjct 3993 AGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTATTTA 4052 Query 63512 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTAC 63570 | || | | ||||| |||||||| || || ||||| || | ||||| || || Sbjct 4053 TTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCG-TGAATACCAAC 4111 Query 63571 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 63630 || |||||||| | ||| || || || | ||| | | ||| | | | | | Sbjct 4112 GGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTTCCATCGAGTCGAAGAAG 4171 Query 63631 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63690 ||| ||| || | || || || || || || | ||| |||||||| ||||| | Sbjct 4172 GTATGATCGCTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGAC 4231 Query 63691 AATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAA 63749 || | |||||||| | | | || | |||| ||| | | | ||| | Sbjct 4232 GATTGCGGAGTTGAGCTCTGCTTCATGCCTCATAAC-GCATTCGTATGTCTCCTTACTGA 4290 Query 63750 TAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTT 63809 | |||||| || | | |||| | || |||||||||| |||| || || || | Sbjct 4291 TCATAGGAGAAGGATGGTTATTTCTTGGGTTGACATAGTGATATAAGTCGCTGATGACGT 4350 Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 ||| | || || |||| |||||| || || ||||| || || | ||| || || | Sbjct 4351 GGGAGAATTGCTTCTTGGTTTGTTTGTGGAGGTTGGATACTGCAATACGAGCAGCGAGGA 4410 Query 63870 TGGCATAATCCGGATG 63885 |||||||||| || || Sbjct 4411 TGGCATAATCGGGGTG 4426 >seq485 Length=41282 Score = 105 bits (116), Expect = 8e-18 Identities = 295/451 (65%), Gaps = 4/451 (1%) Strand=Plus/Minus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 |||||| || || ||||| ||||| || | || ||||| || || || || ||| | Sbjct 7464 CATAACACCAGCCTTCTGGTAGTCACCGACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 7405 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCC 32476 || || || || |||||||| ||||| || |||| | || || | || | || Sbjct 7404 TAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGCAGATTTGTACACCTTGTCGTTACC 7345 Query 32477 CAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 32536 | || | | | |||||||| || || || ||| ||||||| | | || Sbjct 7344 AAGAGCAACGAGGAGACGGTCTGCGACGAACTCGATGTATTGCTTCATCAAGTTCGAGTT 7285 Query 32537 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 32596 ||| || | ||| |||||||||| |||| | || ||||||||||| || || Sbjct 7284 CATGCCAAGAAGCGCGCATGGAAGAGCCTCAGTCAAGAACTCTTGTTCAATCTCAACAGC 7225 Query 32597 GTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 32654 || || || | | |||| || | | | || || | | | || || || Sbjct 7224 CTCGGTGATGACA--TCTTGGACAGCCTGCTTGCTTGGGCGGTGCTTCAAGTGGGAGAAA 7167 Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 | | |||||||| ||| ||| ||||| ||||| | || | || ||||| || Sbjct 7166 AGGAGGCATGCGAAGTCGGTGTGAAGACCTTCGTCACGGGAGATGAGCTCATTGGAGAAA 7107 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 32774 ||||| || | ||| | |||||| || || ||||| || || || || ||||||||| Sbjct 7106 GTGAGACCAGCCATCAAGCCACGTTTCTTGAGCCAGAAGATAGAGGCGAATGATCCACTG 7047 Query 32775 AAGAAAATTCCTTCTACTGCCGCAAAGGCAA 32805 |||||||||||||| || || ||||| |||| Sbjct 7046 AAGAAAATTCCTTCAACAGCAGCAAAAGCAA 7016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633601308450000