Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq68 246 4e-60
seq485 105 8e-18
>seq68
Length=8748
Score = 246 bits (272), Expect = 4e-60
Identities = 1302/2056 (63%), Gaps = 31/2056 (2%)
Strand=Plus/Plus
Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909
||||||||||| || |||||||| | | ||||| || ||||||||||| || || |||
Sbjct 2382 GTGAATTGAATCGGTGCGGATGCAGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 2441
Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969
|| || |||| ||| ||||||||| ||| | ||| | || ||| |||
Sbjct 2442 CCTAGTTTCCAACCGGCAAAATGCATGGACGTAATCTTGCCCATGGTGGGGTCTTTCATA 2501
Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029
|| || ||||| ||||| ||||| | ||| || || | ||| || ||||||| | |
Sbjct 2502 TGAATGTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGCGGCCATTTGAACA 2561
Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 2562 ATTGTTCGTTGGGAAATCTCCCACACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 2621
Query 62090 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146
|| | | ||||| || || || || || || || || | ||||| || | || |
Sbjct 2622 TTGGGGATGTTCTGGATTGAACCGCCGTCAGCAATGATGCGGTTCTTCATGTTGTCTGAC 2681
Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206
|| ||| | ||| | | | | || || || ||||| ||||| ||||| ||
Sbjct 2682 CACAATCCCATGTCGACAAGATCCTTGAGAAGCCATGGGTTAACGACTTGGAATTCCCCT 2741
Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266
| || || | |||| ||| || ||| || || ||||| | | |||||||| ||
Sbjct 2742 GCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACACTCATTAAAACCG 2801
Query 62267 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62326
| ||| |||| || || || |||||||| || || | ||||| || | | ||||
Sbjct 2802 AGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACTGTTGCGGACACCG 2861
Query 62327 TATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNNN 62385
||| | |||| || | || || | ||||| | |||||| || | ||| ||
Sbjct 2862 TATTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTGACTCC 2920
Query 62386 NNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGG 62445
||| || || || | | || ||| | || || || || |
Sbjct 2921 CCACATATCGTATTGAAGTTCGCCTTTTGAGACAGGTGAGCCTTCGTAAGTCTCATAGGT 2980
Query 62446 TCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAA 62505
|| || || ||| | ||| | | | |||||| ||| ||||| || |||||
Sbjct 2981 ACCCAGCTCCTTAGCAATCTCAACAGAAGACGTCAATGCAGCGTGGTAAATAGTCTCGAA 3040
Query 62506 GATCTTCTTATTTAGATCTTGCGCTTCCAGGCTA-TCAAATGGATAATTTAAGAG--AAT 62562
||| | || || | | ||||| ||| | |||||||| ||| ||||| ||
Sbjct 3041 GATTTGAACGTTGAGGTGCTTAGCTTC-AGGTGACTCAAATGG-TAAACGAAGAGCCAAG 3098
Query 62563 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62622
||| || || || | ||||| ||||| | | ||||||| | || | ||| | |
Sbjct 3099 AAA-GCATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGTGACGGAAATT-GCTCT 3156
Query 62623 TTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 62681
||| | ||||| | | || || || || || || || || || || | || |||||||
Sbjct 3157 TTCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTCCTGACAA 3216
Query 62682 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TACAAAC 62737
|||| || || | || || | || || | || | | | || | || |
Sbjct 3217 CGACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTCCCTCGTTCATGTCCACAA 3276
Query 62738 ATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 62795
||||| | |||| |||||||| ||||| || || |||| | | | ||||
Sbjct 3277 ATGTTGGGAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCATCTGGTGCAGAGTATT 3336
Query 62796 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 62855
| || || ||||| ||||| | ||||| || | || | ||| || ||||
Sbjct 3337 CGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCT 3396
Query 62856 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 62915
| || || || |||||||| ||||| |||||||| | || || || | |||| || |
Sbjct 3397 TCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGA 3456
Query 62916 TAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGT-ATCTCTTTTCTCTTTCG 62974
||| | | ||| | | | || || || | |||| | |||| || |||
Sbjct 3457 GAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---TTTGCGACCTCTACCTTCCTTCT 3513
Query 62975 TATAG-TGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATT 63032
||| | | ||| | |||||| || || || | |||| ||| ||||| ||||
Sbjct 3514 CATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCAACCCAGGGCATT 3573
Query 63033 CATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAG 63092
| | |||||||||| | ||| ||||||| | | || || |||||||||||||| |
Sbjct 3574 CGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCG 3633
Query 63093 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 63152
||||||| | ||| || ||||| | || | ||| || || || ||||||
Sbjct 3634 GAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTC 3693
Query 63153 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63212
|| || || ||| | | || || | ||||| || || | ||| || || | | |
Sbjct 3694 GGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCAC 3753
Query 63213 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63272
|||| || |||||||| ||||| || | ||||| || || || || |||||| | ||
Sbjct 3754 CAGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCA 3813
Query 63273 TTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAA 63332
| || | |||||||||||| |||||||||| || | || ||| ||| | ||||| |
Sbjct 3814 TAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGA 3873
Query 63333 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTT 63391
| | ||| ||||| || || || || |||| || || | || || ||| ||
Sbjct 3874 TTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACA-CGTCTTG 3932
Query 63392 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 63451
| ||||| || || || || |||||||| ||| |||||| || || || || ||
Sbjct 3933 AGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAA 3992
Query 63452 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTT 63511
| ||| | || || || || | ||||| || ||||| || || ||||
Sbjct 3993 AGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGTGAAGTATTTA 4052
Query 63512 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTAC 63570
| || | | ||||| |||||||| || || ||||| || | ||||| || ||
Sbjct 4053 TTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCG-TGAATACCAAC 4111
Query 63571 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 63630
|| |||||||| | ||| || || || | ||| | | ||| | | | | |
Sbjct 4112 GGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTTCCATCGAGTCGAAGAAG 4171
Query 63631 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63690
||| ||| || | || || || || || || | ||| |||||||| ||||| |
Sbjct 4172 GTATGATCGCTCGAGGGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGAC 4231
Query 63691 AATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAA 63749
|| | |||||||| | | | || | |||| ||| | | | ||| |
Sbjct 4232 GATTGCGGAGTTGAGCTCTGCTTCATGCCTCATAAC-GCATTCGTATGTCTCCTTACTGA 4290
Query 63750 TAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTT 63809
| |||||| || | | |||| | || |||||||||| |||| || || || |
Sbjct 4291 TCATAGGAGAAGGATGGTTATTTCTTGGGTTGACATAGTGATATAAGTCGCTGATGACGT 4350
Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869
||| | || || |||| |||||| || || ||||| || || | ||| || || |
Sbjct 4351 GGGAGAATTGCTTCTTGGTTTGTTTGTGGAGGTTGGATACTGCAATACGAGCAGCGAGGA 4410
Query 63870 TGGCATAATCCGGATG 63885
|||||||||| || ||
Sbjct 4411 TGGCATAATCGGGGTG 4426
>seq485
Length=41282
Score = 105 bits (116), Expect = 8e-18
Identities = 295/451 (65%), Gaps = 4/451 (1%)
Strand=Plus/Minus
Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416
|||||| || || ||||| ||||| || | || ||||| || || || || ||| |
Sbjct 7464 CATAACACCAGCCTTCTGGTAGTCACCGACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 7405
Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCC 32476
|| || || || |||||||| ||||| || |||| | || || | || | ||
Sbjct 7404 TAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGCAGATTTGTACACCTTGTCGTTACC 7345
Query 32477 CAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 32536
| || | | | |||||||| || || || ||| ||||||| | | ||
Sbjct 7344 AAGAGCAACGAGGAGACGGTCTGCGACGAACTCGATGTATTGCTTCATCAAGTTCGAGTT 7285
Query 32537 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 32596
||| || | ||| |||||||||| |||| | || ||||||||||| || ||
Sbjct 7284 CATGCCAAGAAGCGCGCATGGAAGAGCCTCAGTCAAGAACTCTTGTTCAATCTCAACAGC 7225
Query 32597 GTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 32654
|| || || | | |||| || | | | || || | | | || || ||
Sbjct 7224 CTCGGTGATGACA--TCTTGGACAGCCTGCTTGCTTGGGCGGTGCTTCAAGTGGGAGAAA 7167
Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714
| | |||||||| ||| ||| ||||| ||||| | || | || ||||| ||
Sbjct 7166 AGGAGGCATGCGAAGTCGGTGTGAAGACCTTCGTCACGGGAGATGAGCTCATTGGAGAAA 7107
Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 32774
||||| || | ||| | |||||| || || ||||| || || || || |||||||||
Sbjct 7106 GTGAGACCAGCCATCAAGCCACGTTTCTTGAGCCAGAAGATAGAGGCGAATGATCCACTG 7047
Query 32775 AAGAAAATTCCTTCTACTGCCGCAAAGGCAA 32805
|||||||||||||| || || ||||| ||||
Sbjct 7046 AAGAAAATTCCTTCAACAGCAGCAAAAGCAA 7016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633601308450000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |