Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3721 111 1e-19 >seq3721 Length=43933 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| || |||||||| | || || |||||||| Sbjct 40579 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 40638 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| |||||| || || || || || ||||| |||| Sbjct 40639 GACACCATCGA--CAATGTAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACC 40696 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || |||| ||||| || || || | || |||| || ||| | ||| |||| Sbjct 40697 AGCAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACA 40756 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | ||||||||||| || || || || || || || Sbjct 40757 ACATTCAAAAAGAGTCGACACTGCACTTGGTTCT 40790 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || |||| || | |||||||| || || Sbjct 40807 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACGTTGGAAGTGGAATCTTCG 40866 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | || | ||| ||| ||| ||||| || || || ||||| ||||| Sbjct 40867 GATACCATTGA-TAACGTCAAGTCAAAGATCCAAGACAAGGAGGGTATCCCACCGGACCA 40925 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 |||||| | || || || || || || || || |||| Sbjct 40926 ACAGCGATTGATCTTCGCTGGAAAGCAGTTGGAGGATG 40963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433307535408125