Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq3721 111 1e-19
>seq3721
Length=43933
Score = 111 bits (122), Expect = 1e-19
Identities = 154/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| | ||||| || |||||||| | || || ||||||||
Sbjct 40579 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 40638
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| ||||| || || ||| |||||| || || || || || ||||| ||||
Sbjct 40639 GACACCATCGA--CAATGTAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACC 40696
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || || |||| ||||| || || || | || |||| || ||| | ||| ||||
Sbjct 40697 AGCAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACA 40756
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| ||||||||||| || || || || || || ||
Sbjct 40757 ACATTCAAAAAGAGTCGACACTGCACTTGGTTCT 40790
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/158 (73%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||||||||||| || |||| || | |||||||| || ||
Sbjct 40807 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACGTTGGAAGTGGAATCTTCG 40866
Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || || | || | ||| ||| ||| ||||| || || || ||||| |||||
Sbjct 40867 GATACCATTGA-TAACGTCAAGTCAAAGATCCAAGACAAGGAGGGTATCCCACCGGACCA 40925
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155
|||||| | || || || || || || || || ||||
Sbjct 40926 ACAGCGATTGATCTTCGCTGGAAAGCAGTTGGAGGATG 40963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433307535408125
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |