Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq485 120 3e-22
>seq485
Length=41282
Score = 120 bits (132), Expect = 3e-22
Identities = 199/287 (69%), Gaps = 3/287 (1%)
Strand=Plus/Minus
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
||||| || ||||| | |||||||| |||| || |||| |||||||| |||||||
Sbjct 6837 ATGTAGGTGTCGATGAGGAGAGAATATGTTTCGGAGTGGATGTTCTCCATCATAATTTGG 6778
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481
|| |||||||| || | || || | ||| || ||||| | || | ||| |||||
Sbjct 6777 AAACCGTAGAAGCAACGGGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACGAGG 6718
Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541
||||| || || || || ||||||||||| || || || | || || || || |
Sbjct 6717 TTTTCGTTAACAATTCCGTCGGATGCTGCGAAGAATGCGAGTACGTGAGAGATGAAGTAG 6658
Query 93542 TTCTCATCATCTTTAAG---CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598
||||||||| || || || | ||| || || || ||||| | |||| |||
Sbjct 6657 CGCTCATCATCATTGAGTCTGTTGTTCCAGTCATGAAGGTCCTTTGACAAGTCGATCTCT 6598
Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645
|| | ||||| || ||||| || || ||||| ||||| | ||| ||
Sbjct 6597 TCTGCCGTCCAGAAGGATGCCTCGGCCTTTTTATACATCTGCCAGAT 6551
Score = 91.5 bits (100), Expect = 2e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150
||| || |||||||| || | ||||||||| || || || | ||||||| ||| || |
Sbjct 7161 GCATGCGAAGTCGGTGTGAAGACCTTCGTCACGGGAGATGAGCTCATTGGAGAAAGTGAG 7102
Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210
||| | | || || |||||||||||||| || || || || || ||| || ||
Sbjct 7101 ACCAGCCATCAAGCCACGTTTCTTGAGCCAGAAGATAGAGGCGAATGATCCACTGAAGAA 7042
Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270
|| ||||| || || ||||| || || | |||| || || | | | || | |
Sbjct 7041 AATTCCTTCAACAGCAGCAAAAGCAACTAGGCGTTGAGCGAAGGTAG-AGTTTTTGTCTT 6983
Query 93271 G-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318
| |||||| | | |||||| || || || |||||||| ||||| | |||
Sbjct 6982 GAATCCATCTGACAGCCCAGTCAGCCTTCTTCTTAATGCAAGGAACTGT 6934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556833827055000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |