Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq485 120 3e-22 >seq485 Length=41282 Score = 120 bits (132), Expect = 3e-22 Identities = 199/287 (69%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || ||||| | |||||||| |||| || |||| |||||||| ||||||| Sbjct 6837 ATGTAGGTGTCGATGAGGAGAGAATATGTTTCGGAGTGGATGTTCTCCATCATAATTTGG 6778 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || |||||||| || | || || | ||| || ||||| | || | ||| ||||| Sbjct 6777 AAACCGTAGAAGCAACGGGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACGAGG 6718 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||| || || || || ||||||||||| || || || | || || || || | Sbjct 6717 TTTTCGTTAACAATTCCGTCGGATGCTGCGAAGAATGCGAGTACGTGAGAGATGAAGTAG 6658 Query 93542 TTCTCATCATCTTTAAG---CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 ||||||||| || || || | ||| || || || ||||| | |||| ||| Sbjct 6657 CGCTCATCATCATTGAGTCTGTTGTTCCAGTCATGAAGGTCCTTTGACAAGTCGATCTCT 6598 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || | ||||| || ||||| || || ||||| ||||| | ||| || Sbjct 6597 TCTGCCGTCCAGAAGGATGCCTCGGCCTTTTTATACATCTGCCAGAT 6551 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| || |||||||| || | ||||||||| || || || | ||||||| ||| || | Sbjct 7161 GCATGCGAAGTCGGTGTGAAGACCTTCGTCACGGGAGATGAGCTCATTGGAGAAAGTGAG 7102 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| | | || || |||||||||||||| || || || || || ||| || || Sbjct 7101 ACCAGCCATCAAGCCACGTTTCTTGAGCCAGAAGATAGAGGCGAATGATCCACTGAAGAA 7042 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || ||||| || || ||||| || || | |||| || || | | | || | | Sbjct 7041 AATTCCTTCAACAGCAGCAAAAGCAACTAGGCGTTGAGCGAAGGTAG-AGTTTTTGTCTT 6983 Query 93271 G-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 | |||||| | | |||||| || || || |||||||| ||||| | ||| Sbjct 6982 GAATCCATCTGACAGCCCAGTCAGCCTTCTTCTTAATGCAAGGAACTGT 6934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556833827055000