Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq3755 131 1e-25
seq68 129 5e-25
seq3721 123 2e-23
seq542 102 7e-17
>seq3755
Length=35748
Score = 131 bits (144), Expect = 1e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || |||||||| |||| || || || ||| || |
Sbjct 18515 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 18456
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| || |||| || || || ||||||||||| ||||| || ||||||
Sbjct 18455 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAA 18396
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||| | || || |||||||| || | || ||| |||||| | ||||| ||||||
Sbjct 18395 CAACGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 18336
Query 22399 ATTCAAAAAGAATCCAC 22415
|| ||||| || |||||
Sbjct 18335 ATCCAAAAGGAGTCCAC 18319
>seq68
Length=8748
Score = 129 bits (142), Expect = 5e-25
Identities = 535/828 (65%), Gaps = 27/828 (3%)
Strand=Plus/Plus
Query 129579 GGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTA 129638
||| |||||||||||||| || || ||||| || ||| |||| || | || || || |
Sbjct 3173 GGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTCCTGACAACGACTTGAGTAACCTC 3232
Query 129639 TTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCGACAAATTGATTGACACAAAT 129698
| | | ||| || | ||| || | | ||||| |||||| || | |||
Sbjct 3233 GTGAAGCTTTTGGAAGTCGTAAGTTCCCTCGTTCATGTCCACAAATGTTGGGAGAGCAAT 3292
Query 129699 CGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCA 129758
|| |||| || ||| ||| ||| | | || ||| ||||||||||| | |||
Sbjct 3293 GGATGCCAGGTTACAGCAAGCAACTTCATCTGGTGCAGAGTATTCGACAATTTCTGTGCA 3352
Query 129759 CAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATC 129818
|| ||| | ||||||||| | | |||||| || || ||| | ||||| |||||
Sbjct 3353 CAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTATTGCATGCATC 3412
Query 129819 TTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAAC-- 129876
||||| | |||| | || | || || ||| ||| | |||| ||||| | ||
Sbjct 3413 CTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGAATGG---AGTACCA 3469
Query 129877 AAG-TCTCGAGCCTTGATCTGTCTTAC-AAATTTGCCACATTTCTCGTATGCCACATACA 129934
||| | | | || ||||| || || | | | | || ||||| || | |||| |
Sbjct 3470 AAGCTTTTGGGCTTTGAT-GGTTTTGCGACCTCTACCTTCCTTCTCATAACTCTCATAGA 3528
Query 129935 GTTGTTCAAATTCTGAGCCGTGTAC-GGTGTCGAGCAACGGCGATTCACGCGGACACATC 129993
| ||| ||||| ||||| ||| | | | | | ||| |||| |||||||||
Sbjct 3529 GAGCTTCGAATTCATCGCCGTATACATCAGCCAACCCAGGGC-ATTCGTTGGGACACATC 3587
Query 129994 AAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCG 130053
| |||| ||| | | |||||| || |||||||| | ||| || | ||||| |||
Sbjct 3588 AGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAATCCACAAAGCG 3647
Query 130054 TACAACAAATC----TCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTC--AGTTCA 130107
|| || | ||| |||| |||| |||| ||| ||| |||| || ||
Sbjct 3648 TAGAAGAGATCACGGGCGCGGACTTCT-TCCT---TACCGTGGTT--CTTTCGGAGGTCC 3701
Query 130108 AGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGT 130167
|| || ||| ||| ||| |||||||| || |||| || ||||| | ||| || ||
Sbjct 3702 AGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCACCAGGACGC 3761
Query 130168 TTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCC 130224
||| || || |||||||| | | | | | ||||||| | ||||| | ||| | | |
Sbjct 3762 TTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCATAGGCACA 3821
Query 130225 AATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGA 130284
| || |||| | || || || | ||||| | ||| ||| || | | |||
Sbjct 3822 ATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGATTCTGTGA 3881
Query 130285 ACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCA-ATCGCGTAGCGTTTC 130343
| | | ||||| ||||| ||| | ||| || |||| || || || | || || ||
Sbjct 3882 ATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACACGTCTTG-AGGGTATC 3940
Query 130344 ATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGA 130391
||||| ||| ||||||| || || || |||| | |||||| || ||
Sbjct 3941 GTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGA 3988
>seq3721
Length=43933
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | ||||| || || |||| | || || || | |
Sbjct 40579 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 40638
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || | || ||||| ||||| ||||||||||| ||||| || ||
Sbjct 40639 GACACCATCGACAATGTAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAG 40698
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||||||||| ||||| || || ||| | |||||| ||| || | ||||| ||||||
Sbjct 40699 CAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACAAC 40758
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||||||||| || || | || || ||| | || | || || |||
Sbjct 40759 ATTCAAAAAGAGTCGACACTGCACTTGGTTCTTCGTCTCCGTGGTGGT 40806
Score = 102 bits (112), Expect = 7e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||||| ||||| || || | || | ||||||||| | |
Sbjct 40807 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACGTTGGAAGTGGAATCTTCG 40866
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || | |||| ||| || ||||||||||||||||| ||||| || |||
Sbjct 40867 GATACCATTGATAACGTCAAGTCAAAGATCCAAGACAAGGAGGGTATCCCACCGGACCAA 40926
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || || || || ||||| |||||| | | || | || ||||| |||
Sbjct 40927 CAGCGATTGATCTTCGCTGGAAAGCAGTTGGAGGATGGCAGAACACTGTCTGATTATAAC 40986
Query 22399 ATTCAAAAAGA 22409
|| || || ||
Sbjct 40987 ATCCAGAAGGA 40997
>seq542
Length=29042
Score = 102 bits (112), Expect = 7e-17
Identities = 121/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| ||||| ||||| | |||||||| | ||| || ||||
Sbjct 10085 ACGGGAAAGACTATCACCCTTGAGGTGGAGTCTTCCGATACCATTGACAATGTCAAGTCC 10144
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| ||||| || |||||||||||| | || || ||||| ||
Sbjct 10145 AAGATCCAGGACAAGGAGGGAATTCCCCCGGATCAACAACGTTTGATCTTCGCCGGAAAG 10204
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| | |||||| || ||| | || || |||||||| |||||
Sbjct 10205 CAACTTGAGGATGGACGAACCCTTTCAGACTACAACATCCAAAA 10248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419708177689375
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |