Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3755 131 1e-25 seq68 129 5e-25 seq3721 123 2e-23 seq542 102 7e-17 >seq3755 Length=35748 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || |||||||| |||| || || || ||| || | Sbjct 18515 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 18456 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || || || ||||||||||| ||||| || |||||| Sbjct 18455 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAA 18396 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || |||||||| || | || ||| |||||| | ||||| |||||| Sbjct 18395 CAACGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 18336 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| || ||||| Sbjct 18335 ATCCAAAAGGAGTCCAC 18319 >seq68 Length=8748 Score = 129 bits (142), Expect = 5e-25 Identities = 535/828 (65%), Gaps = 27/828 (3%) Strand=Plus/Plus Query 129579 GGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTA 129638 ||| |||||||||||||| || || ||||| || ||| |||| || | || || || | Sbjct 3173 GGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTCCTGACAACGACTTGAGTAACCTC 3232 Query 129639 TTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCGACAAATTGATTGACACAAAT 129698 | | | ||| || | ||| || | | ||||| |||||| || | ||| Sbjct 3233 GTGAAGCTTTTGGAAGTCGTAAGTTCCCTCGTTCATGTCCACAAATGTTGGGAGAGCAAT 3292 Query 129699 CGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCA 129758 || |||| || ||| ||| ||| | | || ||| ||||||||||| | ||| Sbjct 3293 GGATGCCAGGTTACAGCAAGCAACTTCATCTGGTGCAGAGTATTCGACAATTTCTGTGCA 3352 Query 129759 CAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATC 129818 || ||| | ||||||||| | | |||||| || || ||| | ||||| ||||| Sbjct 3353 CAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTATTGCATGCATC 3412 Query 129819 TTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAAC-- 129876 ||||| | |||| | || | || || ||| ||| | |||| ||||| | || Sbjct 3413 CTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGAATGG---AGTACCA 3469 Query 129877 AAG-TCTCGAGCCTTGATCTGTCTTAC-AAATTTGCCACATTTCTCGTATGCCACATACA 129934 ||| | | | || ||||| || || | | | | || ||||| || | |||| | Sbjct 3470 AAGCTTTTGGGCTTTGAT-GGTTTTGCGACCTCTACCTTCCTTCTCATAACTCTCATAGA 3528 Query 129935 GTTGTTCAAATTCTGAGCCGTGTAC-GGTGTCGAGCAACGGCGATTCACGCGGACACATC 129993 | ||| ||||| ||||| ||| | | | | | ||| |||| ||||||||| Sbjct 3529 GAGCTTCGAATTCATCGCCGTATACATCAGCCAACCCAGGGC-ATTCGTTGGGACACATC 3587 Query 129994 AAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCG 130053 | |||| ||| | | |||||| || |||||||| | ||| || | ||||| ||| Sbjct 3588 AGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAATCCACAAAGCG 3647 Query 130054 TACAACAAATC----TCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTC--AGTTCA 130107 || || | ||| |||| |||| |||| ||| ||| |||| || || Sbjct 3648 TAGAAGAGATCACGGGCGCGGACTTCT-TCCT---TACCGTGGTT--CTTTCGGAGGTCC 3701 Query 130108 AGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGT 130167 || || ||| ||| ||| |||||||| || |||| || ||||| | ||| || || Sbjct 3702 AGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCAAATGCACCAGGACGC 3761 Query 130168 TTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCC 130224 ||| || || |||||||| | | | | | ||||||| | ||||| | ||| | | | Sbjct 3762 TTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCATAGGCACA 3821 Query 130225 AATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGA 130284 | || |||| | || || || | ||||| | ||| ||| || | | ||| Sbjct 3822 ATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGATTCTGTGA 3881 Query 130285 ACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCA-ATCGCGTAGCGTTTC 130343 | | | ||||| ||||| ||| | ||| || |||| || || || | || || || Sbjct 3882 ATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCACACGTCTTG-AGGGTATC 3940 Query 130344 ATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGA 130391 ||||| ||| ||||||| || || || |||| | |||||| || || Sbjct 3941 GTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAAGCATGA 3988 >seq3721 Length=43933 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| | || || || | | Sbjct 40579 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 40638 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || ||||| ||||| ||||||||||| ||||| || || Sbjct 40639 GACACCATCGACAATGTAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAG 40698 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || || ||| | |||||| ||| || | ||||| |||||| Sbjct 40699 CAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACAAC 40758 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || || | || || ||| | || | || || ||| Sbjct 40759 ATTCAAAAAGAGTCGACACTGCACTTGGTTCTTCGTCTCCGTGGTGGT 40806 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| ||||| || || | || | ||||||||| | | Sbjct 40807 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACGTTGGAAGTGGAATCTTCG 40866 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| ||| || ||||||||||||||||| ||||| || ||| Sbjct 40867 GATACCATTGATAACGTCAAGTCAAAGATCCAAGACAAGGAGGGTATCCCACCGGACCAA 40926 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || || || ||||| |||||| | | || | || ||||| ||| Sbjct 40927 CAGCGATTGATCTTCGCTGGAAAGCAGTTGGAGGATGGCAGAACACTGTCTGATTATAAC 40986 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 40987 ATCCAGAAGGA 40997 >seq542 Length=29042 Score = 102 bits (112), Expect = 7e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| ||||| | |||||||| | ||| || |||| Sbjct 10085 ACGGGAAAGACTATCACCCTTGAGGTGGAGTCTTCCGATACCATTGACAATGTCAAGTCC 10144 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || |||||||||||| | || || ||||| || Sbjct 10145 AAGATCCAGGACAAGGAGGGAATTCCCCCGGATCAACAACGTTTGATCTTCGCCGGAAAG 10204 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || | |||||| || ||| | || || |||||||| ||||| Sbjct 10205 CAACTTGAGGATGGACGAACCCTTTCAGACTACAACATCCAAAA 10248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419708177689375