Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq485 96.9 7e-15 >seq485 Length=41282 Score = 96.9 bits (106), Expect = 7e-15 Identities = 257/387 (66%), Gaps = 18/387 (5%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| | Sbjct 7427 TCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGCA 7368 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| |||| | ||||| || |||| || |||||||| || ||||| | Sbjct 7367 GATTTGTACACCTTGTCGTTACCAAGAGCAACGAGGAGACGGTCTGCGACGAACTCGATG 7308 Query 251683 TACTGTCCCATCA-GTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGAT 251741 || || ||||| |||| ||||||||||||| | || |||| |||||| | Sbjct 7307 TATTGCTTCATCAAGTTC-GAGTTCATGCCAAGAAGCGCGCATGGAAGAGCCTCAGTCAA 7249 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAG--AGAC 251799 ||| || | ||| | |||| ||||| || || || | ||| | Sbjct 7248 GAACTCTTGTTCAATCTCAACAGCCTC-------GGTGATGACATCTTGGACAGCCTGCT 7196 Query 251800 AGCTT-----GTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCC 251853 |||| || || || | ||| | |||| || || || | | ||| ||||| Sbjct 7195 TGCTTGGGCGGTGCTTCAAGTGGGAGAAAAGGAGGCATGCGAAGTCGGT-GTGAAGACCT 7137 Query 251854 TCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTG 251913 ||||| || ||||| ||| ||||| | | || |||| ||||| ||||| ||| || Sbjct 7136 TCGTCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCATCAAGCCACGTTTCTTG 7077 Query 251914 AGCCAGAAGATTGCGCAAAAGGATCCA 251940 ||||||||||| | | || |||||| Sbjct 7076 AGCCAGAAGATAGAGGCGAATGATCCA 7050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027785769508875