Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq485 96.9 7e-15
>seq485
Length=41282
Score = 96.9 bits (106), Expect = 7e-15
Identities = 257/387 (66%), Gaps = 18/387 (5%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| ||||||||||||||||||||| |
Sbjct 7427 TCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGCA 7368
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| |||||| |||| | ||||| || |||| || |||||||| || ||||| |
Sbjct 7367 GATTTGTACACCTTGTCGTTACCAAGAGCAACGAGGAGACGGTCTGCGACGAACTCGATG 7308
Query 251683 TACTGTCCCATCA-GTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGAT 251741
|| || ||||| |||| ||||||||||||| | || |||| |||||| |
Sbjct 7307 TATTGCTTCATCAAGTTC-GAGTTCATGCCAAGAAGCGCGCATGGAAGAGCCTCAGTCAA 7249
Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAG--AGAC 251799
||| || | ||| | |||| ||||| || || || | ||| |
Sbjct 7248 GAACTCTTGTTCAATCTCAACAGCCTC-------GGTGATGACATCTTGGACAGCCTGCT 7196
Query 251800 AGCTT-----GTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCC 251853
|||| || || || | ||| | |||| || || || | | ||| |||||
Sbjct 7195 TGCTTGGGCGGTGCTTCAAGTGGGAGAAAAGGAGGCATGCGAAGTCGGT-GTGAAGACCT 7137
Query 251854 TCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTG 251913
||||| || ||||| ||| ||||| | | || |||| ||||| ||||| ||| ||
Sbjct 7136 TCGTCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCATCAAGCCACGTTTCTTG 7077
Query 251914 AGCCAGAAGATTGCGCAAAAGGATCCA 251940
||||||||||| | | || ||||||
Sbjct 7076 AGCCAGAAGATAGAGGCGAATGATCCA 7050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027785769508875
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |