Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3755 190 4e-43 seq3721 185 2e-41 seq542 125 1e-23 seq485 105 1e-17 >seq3755 Length=35748 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || || || | |||||||| || |||||||| ||||||||||| || ||||| Sbjct 18288 TCCACCACGTAGACGAAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 18347 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | |||||||| | ||||| |||||||| || | | |||||| || || || Sbjct 18348 AAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGG 18407 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| || |||||||| || ||||| | |||||| |||||||| || | ||||| || Sbjct 18408 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAAC 18467 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||||||| |||||||||||||||||||| |||||||| Sbjct 18468 CTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 18515 >seq3721 Length=43933 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||| || |||||||||||||| || Sbjct 41033 CCGCCACGGAGACGAAGCACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCAGAC 40974 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| || ||||| || |||||||| || ||||| || | || |||||||| ||||| Sbjct 40973 AGTGTTCTGCCATCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGG 40914 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||||| ||||||| || ||||| || | ||||| ||| Sbjct 40913 ATACCCTCCTTGTCTTGGATCTTTGACTTGACGTTATCAATGGTATCCGAAGATTCCACT 40854 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| ||||| || | ||||||||||| |||||||| Sbjct 40853 TCCAACGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 40807 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||||||||| ||||| || ||||| Sbjct 40805 CCACCACGGAGACGAAGAACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGAT 40746 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || || | ||| ||||| ||||| Sbjct 40745 AGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 40686 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||| || || | ||| || ||||||||||||| || || || Sbjct 40685 ATACCCTCCTTATCTTGGATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCAACC 40626 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| ||||| || |||||||||||||| || ||||| Sbjct 40625 TCCAATGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579 Score = 158 bits (174), Expect = 2e-33 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || || || || ||||||||||| || |||||| Sbjct 40577 CCACCACGAAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAG 40518 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | || || |||||||| || || | ||| ||||| || ||| Sbjct 40517 AGGGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGA 40458 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| ||||| ||||| | |||||| |||||||| || | ||||| || Sbjct 40457 ATGCCCTCCTTATCTTGGATCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCGACC 40398 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | |||||||| || || ||||| |||||||||| Sbjct 40397 TCAAGAGTGATGGTCTTGCCGGTGAGAGTCTTGACGA 40361 Score = 100 bits (110), Expect = 5e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | || || || ||||| ||||||||||| || ||| Sbjct 40292 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTC 40233 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| | |||||| || ||||| || | | |||||||| || ||| Sbjct 40232 AAGGTACGACCGTCTTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGA 40173 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || ||||| || || ||||| ||||||| ||||||||||| ||| || || || Sbjct 40172 ATTCCCTCCTTATCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTC-GCTGGACTCAAC 40114 Query 68414 TTCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||||| || || || Sbjct 40113 CTCGAGAGTGATGGTCTTGCCGGT 40090 >seq542 Length=29042 Score = 125 bits (138), Expect = 1e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| || || || || || | ||||| || | ||||| |||||||| || Sbjct 10248 TTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCATCCTCAAGTTGCTTTCCGGCGAAGATC 10189 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | |||||| || || ||||| || |||||||| || ||||| | |||||| || Sbjct 10188 AAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 10129 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 ||||| || | || || || || | |||||| || |||||||| |||||||||||||| Sbjct 10128 ATGGTATCGGAAGACTCCACCTCAAGGGTGATAGTCTTTCCCGTAAGGGTCTTGACGAA 10070 >seq485 Length=41282 Score = 105 bits (116), Expect = 1e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||| || || ||||||||||| || || | |||||||||||| | |||||| | Sbjct 7464 CATAACACCAGCCTTCTGGTAGTCACCGACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 7405 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 ||||| ||| |||||||||||| |||||||| | | || |||| || ||| Sbjct 7404 TAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGCAGATTTGTACACCTTGTCGTTACC 7345 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 || || || | ||||| || |||||||||||||| || |||||| || |||||| Sbjct 7344 AAGAGCAACGAGGAGACGGTCTGCGACGAACTCGATGTATTGCTTCATCAAGTTCGAGTT 7285 Query 10115 CATGCCAA 10122 |||||||| Sbjct 7284 CATGCCAA 7277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921577758915000