Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3721 105 6e-18 >seq3721 Length=43933 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || | ||| | ||||| || ||||| |||||||| ||| Sbjct 40295 ATACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCG 40236 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| |||||| |||||||| || || || ||| |||| | |||||||||||||| Sbjct 40235 CTCAAGGTACGACCGTCTTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGG 40176 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || || || ||||| || | | || | ||||||| |||| || Sbjct 40175 GGAATTCCCTCCTTATCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCGCTGGACTCA 40116 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358 || || | || | || |||||||| Sbjct 40115 ACCTCGAGAGTGATGGTCTTGCCGGT 40090 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | |||||||| ||||| |||||||| ||| Sbjct 40580 ATACCACCACGAAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCG 40521 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||| ||||||||||| ||| | || ||||| || ||||||||| Sbjct 40520 GAGAGGGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGA 40461 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || || || ||||| || | | || | ||| |||| |||||| Sbjct 40460 GGAATGCCCTCCTTATCTTGGATCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCG 40401 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 || || | || | || |||||||| ||||| || || Sbjct 40400 ACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTCTTGAC 40363 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || ||||||||||||||||| ||| Sbjct 40808 ATACCACCACGGAGACGAAGAACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCG 40749 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| || || || |||||||| |||| ||||| || |||||||| Sbjct 40748 GATAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGT 40689 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || || || |||| | || | |||||| | || || Sbjct 40688 GGGATACCCTCCTTATCTTGGATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCA 40629 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || ||||| || || || || || || ||||| Sbjct 40628 ACCTCCAATGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420114558496500