Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq3721 105 6e-18
>seq3721
Length=43933
Score = 105 bits (116), Expect = 6e-18
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||||||||| || | | || | ||| | ||||| || ||||| |||||||| |||
Sbjct 40295 ATACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCG 40236
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|||| |||||| |||||||| || || || ||| |||| | ||||||||||||||
Sbjct 40235 CTCAAGGTACGACCGTCTTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGG 40176
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || || || || ||||| || | | || | ||||||| |||| ||
Sbjct 40175 GGAATTCCCTCCTTATCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCGCTGGACTCA 40116
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358
|| || | || | || ||||||||
Sbjct 40115 ACCTCGAGAGTGATGGTCTTGCCGGT 40090
Score = 105 bits (116), Expect = 6e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || || || | |||||||| ||||| |||||||| |||
Sbjct 40580 ATACCACCACGAAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCG 40521
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || ||||| ||||||||||| ||| | || ||||| || |||||||||
Sbjct 40520 GAGAGGGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGA 40461
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || || || ||||| || | | || | ||| |||| ||||||
Sbjct 40460 GGAATGCCCTCCTTATCTTGGATCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCG 40401
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370
|| || | || | || |||||||| ||||| || ||
Sbjct 40400 ACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTCTTGAC 40363
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | ||| || || | || || ||||||||||||||||| |||
Sbjct 40808 ATACCACCACGGAGACGAAGAACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCG 40749
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| |||||| ||| || || || |||||||| |||| ||||| || ||||||||
Sbjct 40748 GATAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGT 40689
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || || || || || || |||| | || | |||||| | || ||
Sbjct 40688 GGGATACCCTCCTTATCTTGGATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCA 40629
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || ||||| || || || || || || |||||
Sbjct 40628 ACCTCCAATGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420114558496500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |