Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq485 183 6e-41 >seq485 Length=41282 Score = 183 bits (202), Expect = 6e-41 Identities = 360/519 (69%), Gaps = 15/519 (3%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691 || ||||| ||||||||||| |||||||| ||| ||||| | || | | | | || Sbjct 6940 CCTTGCATTAAGAAGAAGGCTGACTGGGCTGTCAGATGGATTCA-AGACAAAAACTCTAC 6998 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 |||| | | || || || ||| | || || || || || |||||| || | || Sbjct 6999 CTTCGCTCAACGCCTAGTTGCTTTTGCTGCTGTTGAAGGAATTTTCTTCAGTGGATCATT 7058 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTG--TCGATGCCCGGACTCACCTTCTCGAAC 42809 |||||| ||||||||||||||| || ||| | |||| | || ||||| ||||| || Sbjct 7059 CGCCTCTATCTTCTGGCTCAAG--AAACGTGGCTTGATGGCTGGTCTCACTTTCTCCAAT 7116 Query 42810 GAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGC 42869 || |||||| | | ||||| || || || | ||||| || |||||||| ||||| | Sbjct 7117 GAGCTCATCTCCCGTGACGAAGGTCTTCACACCGACTTCGCATGCCTCCTTTTCTC---C 7173 Query 42870 CACCTCAGGCACAAGCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGA 42928 ||| | | |||| |||| | ||| || |||| | ||||||| ||||| || || Sbjct 7174 CACTTGAAGCAC-CGCCCAAGCAAGCAGGCTGTCCAAGATGTCATCACCGAGGCTGTTGA 7232 Query 42929 GATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGA 42988 ||| || | |||||| | || || | || || | || | ||||||||| | Sbjct 7233 GATTGAACAAGAGTTCTTGACTGAGGCTCTTCCATGCGCGCTTCTTGGCATGAACTCGAA 7292 Query 42989 CCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTC 43046 | | ||| |||| |||||| ||| |||||| |||| |||||| || | | ||| | Sbjct 7293 CTTGATGAAGCAA-TACATCGAGTTCGTCGCAGACCGTCTCCTCGTTGC-TCTTGGTAAC 7350 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 | | ||||| | | |||||||||||| |||||||||||||| | | ||| Sbjct 7351 GACAAGGTGTACAAATCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTAGCAGGC 7410 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||| ||||| ||||||||| | |||| ||||||||| Sbjct 7411 AAGACAAACTTCTTCGAGAAGAGAGTCGGTGACTACCAG 7449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944293458570000