Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq485 183 6e-41
>seq485
Length=41282
Score = 183 bits (202), Expect = 6e-41
Identities = 360/519 (69%), Gaps = 15/519 (3%)
Strand=Plus/Plus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691
|| ||||| ||||||||||| |||||||| ||| ||||| | || | | | | ||
Sbjct 6940 CCTTGCATTAAGAAGAAGGCTGACTGGGCTGTCAGATGGATTCA-AGACAAAAACTCTAC 6998
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|||| | | || || || ||| | || || || || || |||||| || | ||
Sbjct 6999 CTTCGCTCAACGCCTAGTTGCTTTTGCTGCTGTTGAAGGAATTTTCTTCAGTGGATCATT 7058
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTG--TCGATGCCCGGACTCACCTTCTCGAAC 42809
|||||| ||||||||||||||| || ||| | |||| | || ||||| ||||| ||
Sbjct 7059 CGCCTCTATCTTCTGGCTCAAG--AAACGTGGCTTGATGGCTGGTCTCACTTTCTCCAAT 7116
Query 42810 GAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGC 42869
|| |||||| | | ||||| || || || | ||||| || |||||||| ||||| |
Sbjct 7117 GAGCTCATCTCCCGTGACGAAGGTCTTCACACCGACTTCGCATGCCTCCTTTTCTC---C 7173
Query 42870 CACCTCAGGCACAAGCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGA 42928
||| | | |||| |||| | ||| || |||| | ||||||| ||||| || ||
Sbjct 7174 CACTTGAAGCAC-CGCCCAAGCAAGCAGGCTGTCCAAGATGTCATCACCGAGGCTGTTGA 7232
Query 42929 GATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGA 42988
||| || | |||||| | || || | || || | || | ||||||||| |
Sbjct 7233 GATTGAACAAGAGTTCTTGACTGAGGCTCTTCCATGCGCGCTTCTTGGCATGAACTCGAA 7292
Query 42989 CCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTC 43046
| | ||| |||| |||||| ||| |||||| |||| |||||| || | | ||| |
Sbjct 7293 CTTGATGAAGCAA-TACATCGAGTTCGTCGCAGACCGTCTCCTCGTTGC-TCTTGGTAAC 7350
Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106
| | ||||| | | |||||||||||| |||||||||||||| | | |||
Sbjct 7351 GACAAGGTGTACAAATCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTAGCAGGC 7410
Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
||||| ||||| ||||||||| | |||| |||||||||
Sbjct 7411 AAGACAAACTTCTTCGAGAAGAGAGTCGGTGACTACCAG 7449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944293458570000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |