Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq3755 141 2e-28
seq3721 122 2e-22
seq542 109 1e-18
seq485 96.9 8e-15
seq3694 95.1 3e-14
>seq3755
Length=35748
Score = 141 bits (156), Expect = 2e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| || || | ||| || | |||| ||| || |||||||| || |||||||
Sbjct 18288 TCCACCACGTAGACGAAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 18347
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|| |||||||| ||||| | ||| || || |||||||||| ||| |||||| | ||
Sbjct 18348 AAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGG 18407
Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
||||| || || |||||||| || | || || || || || | ||| ||||| ||
Sbjct 18408 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAAC 18467
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| || || || || || ||||||||||| ||||||||
Sbjct 18468 CTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 18515
>seq3721
Length=43933
Score = 122 bits (134), Expect = 2e-22
Identities = 136/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| || ||||||| ||| || || |||||||| | |||||| || |||||
Sbjct 40542 TTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAA 40483
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|||||||| || || || || || || ||||| ||||| || | || || ||
Sbjct 40482 AATCAGACGTTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGGATCTTAGACTTGACATT 40423
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | |||| ||||| || || || ||||| ||||| ||||| |||||||||||
Sbjct 40422 GTCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTCTTGAC 40363
Query 288462 GA 288463
||
Sbjct 40362 GA 40361
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| || || ||||| | ||| || | || | || || || || ||||| ||||| ||
Sbjct 41036 TGACCGCCACGGAGACGAAGCACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCA 40977
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || || | || || || || || ||||| |||||||||| |||||||| |
Sbjct 40976 GACAGTGTTCTGCCATCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGT 40917
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || || || ||||| || | || ||||| || || | ||| |||||
Sbjct 40916 GGGATACCCTCCTTGTCTTGGATCTTTGACTTGACGTTATCAATGGTATCCGAAGATTCC 40857
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | ||| || ||||| ||||||| |||||||||||| ||||||||
Sbjct 40856 ACTTCCAACGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 40807
Score = 105 bits (116), Expect = 2e-17
Identities = 141/192 (73%), Gaps = 8/192 (4%)
Strand=Plus/Minus
Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321
|| |||||||| | || || |||||||| || |||||| | || || ||||||
Sbjct 40277 AGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAGGTACGACCGTCT 40218
Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378
|| | || || ||||||||||||| |||||||| || ||| ||||| || |||
Sbjct 40217 TCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGG---TCCGGGGGAATTCCCTCCTTA 40161
Query 288379 TCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437
|||||||| || ||| || ||||| || || | ||||| || || || ||||| |||||
Sbjct 40160 TCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTCGCTGGACTCAACCTCGAGAGTGAT 40102
Query 288438 CGTCTTCCCGGT 288449
||||| |||||
Sbjct 40101 GGTCTTGCCGGT 40090
Score = 104 bits (114), Expect = 6e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || | || | || |||||||| || || |||||||
Sbjct 40805 CCACCACGGAGACGAAGAACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGAT 40746
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || || || || ||||| ||||| || || ||||
Sbjct 40745 AGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 40686
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||| |||||||||| || || || || || | || ||| || ||
Sbjct 40685 ATACCCTCCTTATCTTGGATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCAACC 40626
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | ||||| ||||| ||||| || ||||||||||| || |||||
Sbjct 40625 TCCAATGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579
>seq542
Length=29042
Score = 109 bits (120), Expect = 1e-18
Identities = 134/182 (74%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|||||||| || ||||| | || || ||||| || || | ||| ||||| |||||||||
Sbjct 10248 TTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCATCCTCAAGTTGCTTTCCGGCGAAGATC 10189
Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
| ||| |||||| || ||| ||||| || || |||||||| || | || || ||
Sbjct 10188 AAACGTTGTTGA---TCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 10132
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | |||| || || || || || ||||| ||||| || || || |||||||||
Sbjct 10131 TCAATGGTATCGGAAGACTCCACCTCAAGGGTGATAGTCTTTCCCGTAAGGGTCTTGACG 10072
Query 288463 AA 288464
||
Sbjct 10071 AA 10070
>seq485
Length=41282
Score = 96.9 bits (106), Expect = 8e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 269113 GAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTC 269172
||| |||||||| | ||| ||| | ||||| | | | || ||||| | | |
Sbjct 7237 GAACAAGAGTTCTTGACTGAGGCTCTTCCATGCGCGCTTCTTGGCATGAACTCGAACTTG 7296
Query 269173 ATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAA 269232
||||| ||||| ||||| ||||| || || ||| || || || || ||| | || ||
Sbjct 7297 ATGAAGCAATACATCGAGTTCGTCGCAGACCGTCTCCTCGTTGCTCTTGGTAACGACAAG 7356
Query 269233 GTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACG 269292
|||||||| || || ||||||| ||| ||||| || || || | ||| |||||
Sbjct 7357 GTGTACAAATCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTAGCAGGCAAGACA 7416
Query 269293 AACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340
||||||||||| ||| | ||| | ||||| || ||||||| |||
Sbjct 7417 AACTTCTTCGAGAAGAGAGTCGGTGACTACCAGAAGGCTGGTGTTATG 7464
>seq3694
Length=35177
Score = 95.1 bits (104), Expect = 3e-14
Identities = 188/276 (68%), Gaps = 2/276 (1%)
Strand=Plus/Minus
Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 325381
||||| || | ||| || ||| | ||||| || ||||| | ||||||||| ||
Sbjct 27027 ATATAACGAGGACTAGCTGCATCGCTGCCACCTTGGAATCTGGTACCGAACTGTCCACTT 26968
Query 325382 GGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTC 325441
||| || || || | ||| || ||| || ||| ||||||||| | |||||||
Sbjct 26967 GGCTCTAAACAATTAACGTTGTTAGATCCAACGAAATTCTGTGCAAGTCCGATGATGGTC 26908
Query 325442 CCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACC-GCTGAA 325500
|||| || ||||| || || || ||||| | || | || | ||||| ||| ||
Sbjct 26907 ATGTGCATTGAGGCTTCACCGTGATGGTAGGCCGAAACCTGTCCAGCATAACCAGCT-AA 26849
Query 325501 CTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCG 325560
| |||| |||| || || || | |||||||||||| | ||| || ||||| |
Sbjct 26848 TTCCACAACTTTCATATCCGTGGTGAGGTTGCGCTTGAAACAGGCATACATGACTTTTCT 26789
Query 325561 TTGAGAAGGTTTGAAACCATCAACGACCGACGGAAT 325596
|||| ||| |||| |||||| || || || |||||
Sbjct 26788 TTGACCAGGCTTGAGACCATCGACAACTGAAGGAAT 26753
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179595832002250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |