Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3755 141 2e-28 seq3721 122 2e-22 seq542 109 1e-18 seq485 96.9 8e-15 seq3694 95.1 3e-14 >seq3755 Length=35748 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || | |||| ||| || |||||||| || ||||||| Sbjct 18288 TCCACCACGTAGACGAAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 18347 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || |||||||| ||||| | ||| || || |||||||||| ||| |||||| | || Sbjct 18348 AAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGG 18407 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||| || || |||||||| || | || || || || || | ||| ||||| || Sbjct 18408 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAAC 18467 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || || || || || ||||||||||| |||||||| Sbjct 18468 CTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 18515 >seq3721 Length=43933 Score = 122 bits (134), Expect = 2e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||||| ||| || || |||||||| | |||||| || ||||| Sbjct 40542 TTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAA 40483 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||||| || || || || || || ||||| ||||| || | || || || Sbjct 40482 AATCAGACGTTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGGATCTTAGACTTGACATT 40423 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | |||| ||||| || || || ||||| ||||| ||||| ||||||||||| Sbjct 40422 GTCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTCTTGAC 40363 Query 288462 GA 288463 || Sbjct 40362 GA 40361 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || ||||| | ||| || | || | || || || || ||||| ||||| || Sbjct 41036 TGACCGCCACGGAGACGAAGCACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCA 40977 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || | || || || || || ||||| |||||||||| |||||||| | Sbjct 40976 GACAGTGTTCTGCCATCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGT 40917 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || || ||||| || | || ||||| || || | ||| ||||| Sbjct 40916 GGGATACCCTCCTTGTCTTGGATCTTTGACTTGACGTTATCAATGGTATCCGAAGATTCC 40857 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||| || ||||| ||||||| |||||||||||| |||||||| Sbjct 40856 ACTTCCAACGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 40807 Score = 105 bits (116), Expect = 2e-17 Identities = 141/192 (73%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | || || |||||||| || |||||| | || || |||||| Sbjct 40277 AGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAGGTACGACCGTCT 40218 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || ||||||||||||| |||||||| || ||| ||||| || ||| Sbjct 40217 TCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGG---TCCGGGGGAATTCCCTCCTTA 40161 Query 288379 TCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 |||||||| || ||| || ||||| || || | ||||| || || || ||||| ||||| Sbjct 40160 TCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTCGCTGGACTCAACCTCGAGAGTGAT 40102 Query 288438 CGTCTTCCCGGT 288449 ||||| ||||| Sbjct 40101 GGTCTTGCCGGT 40090 Score = 104 bits (114), Expect = 6e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | || | || |||||||| || || ||||||| Sbjct 40805 CCACCACGGAGACGAAGAACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGAT 40746 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || ||||| ||||| || || |||| Sbjct 40745 AGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 40686 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| |||||||||| || || || || || | || ||| || || Sbjct 40685 ATACCCTCCTTATCTTGGATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCAACC 40626 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 40625 TCCAATGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 40579 >seq542 Length=29042 Score = 109 bits (120), Expect = 1e-18 Identities = 134/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || ||||| | || || ||||| || || | ||| ||||| ||||||||| Sbjct 10248 TTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCATCCTCAAGTTGCTTTCCGGCGAAGATC 10189 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 | ||| |||||| || ||| ||||| || || |||||||| || | || || || Sbjct 10188 AAACGTTGTTGA---TCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 10132 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||| || || || || || ||||| ||||| || || || ||||||||| Sbjct 10131 TCAATGGTATCGGAAGACTCCACCTCAAGGGTGATAGTCTTTCCCGTAAGGGTCTTGACG 10072 Query 288463 AA 288464 || Sbjct 10071 AA 10070 >seq485 Length=41282 Score = 96.9 bits (106), Expect = 8e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 269113 GAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTC 269172 ||| |||||||| | ||| ||| | ||||| | | | || ||||| | | | Sbjct 7237 GAACAAGAGTTCTTGACTGAGGCTCTTCCATGCGCGCTTCTTGGCATGAACTCGAACTTG 7296 Query 269173 ATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAA 269232 ||||| ||||| ||||| ||||| || || ||| || || || || ||| | || || Sbjct 7297 ATGAAGCAATACATCGAGTTCGTCGCAGACCGTCTCCTCGTTGCTCTTGGTAACGACAAG 7356 Query 269233 GTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACG 269292 |||||||| || || ||||||| ||| ||||| || || || | ||| ||||| Sbjct 7357 GTGTACAAATCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTAGCAGGCAAGACA 7416 Query 269293 AACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340 ||||||||||| ||| | ||| | ||||| || ||||||| ||| Sbjct 7417 AACTTCTTCGAGAAGAGAGTCGGTGACTACCAGAAGGCTGGTGTTATG 7464 >seq3694 Length=35177 Score = 95.1 bits (104), Expect = 3e-14 Identities = 188/276 (68%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 325381 ||||| || | ||| || ||| | ||||| || ||||| | ||||||||| || Sbjct 27027 ATATAACGAGGACTAGCTGCATCGCTGCCACCTTGGAATCTGGTACCGAACTGTCCACTT 26968 Query 325382 GGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTC 325441 ||| || || || | ||| || ||| || ||| ||||||||| | ||||||| Sbjct 26967 GGCTCTAAACAATTAACGTTGTTAGATCCAACGAAATTCTGTGCAAGTCCGATGATGGTC 26908 Query 325442 CCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACC-GCTGAA 325500 |||| || ||||| || || || ||||| | || | || | ||||| ||| || Sbjct 26907 ATGTGCATTGAGGCTTCACCGTGATGGTAGGCCGAAACCTGTCCAGCATAACCAGCT-AA 26849 Query 325501 CTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCG 325560 | |||| |||| || || || | |||||||||||| | ||| || ||||| | Sbjct 26848 TTCCACAACTTTCATATCCGTGGTGAGGTTGCGCTTGAAACAGGCATACATGACTTTTCT 26789 Query 325561 TTGAGAAGGTTTGAAACCATCAACGACCGACGGAAT 325596 |||| ||| |||| |||||| || || || ||||| Sbjct 26788 TTGACCAGGCTTGAGACCATCGACAACTGAAGGAAT 26753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179595832002250