Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq485 132 1e-25
seq3694 100 6e-16
>seq485
Length=41282
Score = 132 bits (146), Expect = 1e-25
Identities = 182/252 (72%), Gaps = 2/252 (1%)
Strand=Plus/Plus
Query 243503 TCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGC 243562
||||||| || || ||||| | ||| | || ||| | || ||| |||||||| ||
Sbjct 7214 TCATCACCGAGGCTGTTGAGATTGAACAAGAGTTCTTGACTGAGGCTCTTCCATGCGCGC 7273
Query 243563 TTATTGGCATGAACTCTGAAC-TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621
|| ||||||||||||| |||| | ||| || |||||||| ||||| || ||||| |
Sbjct 7274 TTCTTGGCATGAACTC-GAACTTGATGAAGCAATACATCGAGTTCGTCGCAGACCGTCTC 7332
Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681
|| | || |||||| | || || |||||||| || |||||||| | ||| ||||||
Sbjct 7333 CTCGTTGCTCTTGGTAACGACAAGGTGTACAAATCTGCCAACCCCTTCGACTTCATGGAG 7392
Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGC 243741
||| || || ||| || || ||||||||||| ||| | ||| |||| || ||
Sbjct 7393 AACATCTCCCTAGCAGGCAAGACAAACTTCTTCGAGAAGAGAGTCGGTGACTACCAGAAG 7452
Query 243742 CCTGGTGTGATG 243753
||||||| |||
Sbjct 7453 GCTGGTGTTATG 7464
>seq3694
Length=35177
Score = 100 bits (110), Expect = 6e-16
Identities = 193/282 (68%), Gaps = 2/282 (1%)
Strand=Plus/Minus
Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496
||||| ||||| || | ||| || ||| | ||||| || ||||| | |||||||||
Sbjct 27033 GTGAAGATATAACGAGGACTAGCTGCATCGCTGCCACCTTGGAATCTGGTACCGAACTGT 26974
Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556
|| ||| || || || | ||| || ||| || ||| ||||||||| | |
Sbjct 26973 CCACTTGGCTCTAAACAATTAACGTTGTTAGATCCAACGAAATTCTGTGCAAGTCCGATG 26914
Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACC- 297615
|||||| |||| || ||||| || || || ||||| | || | || | |||||
Sbjct 26913 ATGGTCATGTGCATTGAGGCTTCACCGTGATGGTAGGCCGAAACCTGTCCAGCATAACCA 26854
Query 297616 GCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCAC 297675
||| || | |||| |||| || || || | |||||||||||| | ||| || ||
Sbjct 26853 GCT-AATTCCACAACTTTCATATCCGTGGTGAGGTTGCGCTTGAAACAGGCATACATGAC 26795
Query 297676 TTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAAT 297717
||| | |||| ||| |||| |||||| || || || |||||
Sbjct 26794 TTTTCTTTGACCAGGCTTGAGACCATCGACAACTGAAGGAAT 26753
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102825243731250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |