Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq485 132 1e-25 seq3694 100 6e-16 >seq485 Length=41282 Score = 132 bits (146), Expect = 1e-25 Identities = 182/252 (72%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 243503 TCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGC 243562 ||||||| || || ||||| | ||| | || ||| | || ||| |||||||| || Sbjct 7214 TCATCACCGAGGCTGTTGAGATTGAACAAGAGTTCTTGACTGAGGCTCTTCCATGCGCGC 7273 Query 243563 TTATTGGCATGAACTCTGAAC-TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || ||||||||||||| |||| | ||| || |||||||| ||||| || ||||| | Sbjct 7274 TTCTTGGCATGAACTC-GAACTTGATGAAGCAATACATCGAGTTCGTCGCAGACCGTCTC 7332 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || | || |||||| | || || |||||||| || |||||||| | ||| |||||| Sbjct 7333 CTCGTTGCTCTTGGTAACGACAAGGTGTACAAATCTGCCAACCCCTTCGACTTCATGGAG 7392 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGC 243741 ||| || || ||| || || ||||||||||| ||| | ||| |||| || || Sbjct 7393 AACATCTCCCTAGCAGGCAAGACAAACTTCTTCGAGAAGAGAGTCGGTGACTACCAGAAG 7452 Query 243742 CCTGGTGTGATG 243753 ||||||| ||| Sbjct 7453 GCTGGTGTTATG 7464 >seq3694 Length=35177 Score = 100 bits (110), Expect = 6e-16 Identities = 193/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 ||||| ||||| || | ||| || ||| | ||||| || ||||| | ||||||||| Sbjct 27033 GTGAAGATATAACGAGGACTAGCTGCATCGCTGCCACCTTGGAATCTGGTACCGAACTGT 26974 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 || ||| || || || | ||| || ||| || ||| ||||||||| | | Sbjct 26973 CCACTTGGCTCTAAACAATTAACGTTGTTAGATCCAACGAAATTCTGTGCAAGTCCGATG 26914 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACC- 297615 |||||| |||| || ||||| || || || ||||| | || | || | ||||| Sbjct 26913 ATGGTCATGTGCATTGAGGCTTCACCGTGATGGTAGGCCGAAACCTGTCCAGCATAACCA 26854 Query 297616 GCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCAC 297675 ||| || | |||| |||| || || || | |||||||||||| | ||| || || Sbjct 26853 GCT-AATTCCACAACTTTCATATCCGTGGTGAGGTTGCGCTTGAAACAGGCATACATGAC 26795 Query 297676 TTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAAT 297717 ||| | |||| ||| |||| |||||| || || || ||||| Sbjct 26794 TTTTCTTTGACCAGGCTTGAGACCATCGACAACTGAAGGAAT 26753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102825243731250