Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq68 123 3e-23
>seq68
Length=8748
Score = 123 bits (136), Expect = 3e-23
Identities = 523/819 (64%), Gaps = 19/819 (2%)
Strand=Plus/Plus
Query 114510 CAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTT 114569
||| ||| || | |||||| || |||| ||| || || ||||||||| | ||||||||
Sbjct 3328 CAGAGTATTCGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTT 3387
Query 114570 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 114629
| || ||| | || || |||||||||||||||||| |||| | || ||||| ||||
Sbjct 3388 GGTTGCTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTT 3447
Query 114630 GGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTG---GCTCGCC 114686
| | || |||||| | | ||| | | |||| | ||| ||| ||| |
Sbjct 3448 GAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTTTTGCGACCTCTAC 3504
Query 114687 CCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 114746
| |||| ||| || | ||||| ||||| || || || || | || | | ||
Sbjct 3505 CTTCCTTCTCATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCAACC 3564
Query 114747 CTGGTGCCTTATCTGGG-CAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATG 114805
| || || || |||| || | || | ||| | || || || |||||||||||
Sbjct 3565 CAGG-GCATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATA 3623
Query 114806 AAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 114865
||||| || || ||||| | ||| |||||||||| || ||| ||||||| | ||
Sbjct 3624 AAGAGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCG 3683
Query 114866 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 114925
|| || || | |||| ||| || | | || |||||||| || || ||||| |
Sbjct 3684 TGGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATT 3743
Query 114926 GCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTA 114979
|| | || || | |||| ||| |||||| ||||| ||||| || ||
Sbjct 3744 GCAAATGCACC---AGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTG 3800
Query 114980 AATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGAC 115039
|| || || ||||| || | ||||||| || | ||||| || || ||| |
Sbjct 3801 AAAACTCGTAGCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCA 3860
Query 115040 TTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGC 115099
| | || | || || |||| | ||| || || || || || || ||
Sbjct 3861 CCAGTAGCACGGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATA 3920
Query 115100 GCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGG 115159
|| ||| | |||| | |||| || || ||||| || |||| | | || |||
Sbjct 3921 GCACACGTCTTGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGG 3980
Query 115160 AAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGG 115219
||||| || | ||| | ||||||||||||| ||| || || || | ||||||
Sbjct 3981 AAGCATGATGAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGG 4040
Query 115220 ATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 115278
|||| || | | ||||||| | ||||||||| | | | || || || ||
Sbjct 4041 GTGAA-GTATTTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACC 4099
Query 115279 GTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317
||||||||| | | || ||||| | ||| | ||| ||
Sbjct 4100 GTGAATACCAACGGCAACACGCATGATCATTTGTTGTGG 4138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597324665685000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |