Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq68 123 3e-23 >seq68 Length=8748 Score = 123 bits (136), Expect = 3e-23 Identities = 523/819 (64%), Gaps = 19/819 (2%) Strand=Plus/Plus Query 114510 CAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTT 114569 ||| ||| || | |||||| || |||| ||| || || ||||||||| | |||||||| Sbjct 3328 CAGAGTATTCGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTT 3387 Query 114570 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 114629 | || ||| | || || |||||||||||||||||| |||| | || ||||| |||| Sbjct 3388 GGTTGCTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTT 3447 Query 114630 GGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTG---GCTCGCC 114686 | | || |||||| | | ||| | | |||| | ||| ||| ||| | Sbjct 3448 GAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTTTTGCGACCTCTAC 3504 Query 114687 CCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 114746 | |||| ||| || | ||||| ||||| || || || || | || | | || Sbjct 3505 CTTCCTTCTCATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCAACC 3564 Query 114747 CTGGTGCCTTATCTGGG-CAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATG 114805 | || || || |||| || | || | ||| | || || || ||||||||||| Sbjct 3565 CAGG-GCATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATA 3623 Query 114806 AAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 114865 ||||| || || ||||| | ||| |||||||||| || ||| ||||||| | || Sbjct 3624 AAGAGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCG 3683 Query 114866 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 114925 || || || | |||| ||| || | | || |||||||| || || ||||| | Sbjct 3684 TGGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATT 3743 Query 114926 GCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTA 114979 || | || || | |||| ||| |||||| ||||| ||||| || || Sbjct 3744 GCAAATGCACC---AGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTG 3800 Query 114980 AATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGAC 115039 || || || ||||| || | ||||||| || | ||||| || || ||| | Sbjct 3801 AAAACTCGTAGCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCA 3860 Query 115040 TTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGC 115099 | | || | || || |||| | ||| || || || || || || || Sbjct 3861 CCAGTAGCACGGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATA 3920 Query 115100 GCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGG 115159 || ||| | |||| | |||| || || ||||| || |||| | | || ||| Sbjct 3921 GCACACGTCTTGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGG 3980 Query 115160 AAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGG 115219 ||||| || | ||| | ||||||||||||| ||| || || || | |||||| Sbjct 3981 AAGCATGATGAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGG 4040 Query 115220 ATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 115278 |||| || | | ||||||| | ||||||||| | | | || || || || Sbjct 4041 GTGAA-GTATTTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACC 4099 Query 115279 GTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317 ||||||||| | | || ||||| | ||| | ||| || Sbjct 4100 GTGAATACCAACGGCAACACGCATGATCATTTGTTGTGG 4138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597324665685000