Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq3721 102 9e-17
>seq3721
Length=43933
Score = 102 bits (112), Expect = 9e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| |||| ||| ||| |||||||| ||||| || | ||||| || | || ||
Sbjct 40787 ACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGATAGAGTACGGCCATCCTCG 40728
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
|||||||||||||| || || || || |||||||| | ||| | | |||||| || |
Sbjct 40727 AGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 40668
Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179
||||| || | | | | ||||| ||| || || || | |||||||| ||
Sbjct 40667 ATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCAACCTCCAATGTGATGGTCTTT 40608
Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || || ||||| || |||||||||||
Sbjct 40607 CCGGTAAGGGTCTTGACGAAGATTTGCAT 40579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543186488130000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |