Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq3721 107 2e-18
>seq3721
Length=43933
Score = 107 bits (118), Expect = 2e-18
Identities = 145/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| | |||| || ||||| ||||| |||||||| || | || ||| || |||||
Sbjct 40562 AGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCT 40503
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| || || || ||||| |||| || || |||||||| |||||||| || || || |||
Sbjct 40502 TCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGAATGCCCTCCTTATCT 40443
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | ||||| | || || || | ||| | ||||
Sbjct 40442 TGGATCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTC 40383
Query 64412 TTGCCGGTCAAAGTTTTTACGA 64433
|||||||| | ||| || ||||
Sbjct 40382 TTGCCGGTGAGAGTCTTGACGA 40361
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
||||| ||||||||||||||||| || | | || || | || || |||||||| ||
Sbjct 40775 GTCGACTCTTTTTGAATGTTGTAGTCGGATAGAGTACGGCCATCCTCGAGCTGCTTACCA 40716
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || || || |||||||| || || || || || || ||||| ||||| ||||
Sbjct 40715 GCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGGATTTTCGACTTT 40656
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| || | || || | || || || | || | |||||| ||||| | ||
Sbjct 40655 ACATTGTCGATGGTGTCTGACGACTCAACCTCCAATGTGATGGTCTTTCCGGTAAGGGTC 40596
Query 64427 TTTACGAAAATTTGCAT 64443
|| ||||| ||||||||
Sbjct 40595 TTGACGAAGATTTGCAT 40579
Score = 89.7 bits (98), Expect = 5e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| || | | || || ||||| | || || || ||||| |||||||| ||
Sbjct 40293 ACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCT 40234
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||| || ||||||||||||||||||| || | || | ||||| ||||| || ||
Sbjct 40233 CAAGGTACGACCGTCTTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGG 40174
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|||||| || || || || || || ||| || || | || || | || || ||
Sbjct 40173 AATTCCCTCCTTATCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCGCTGGACTCAAC 40114
Query 64396 TTCTACAGTTACGGTCTTGCCGGT 64419
|| | ||| | ||||||||||||
Sbjct 40113 CTCGAGAGTGATGGTCTTGCCGGT 40090
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499620598455000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |