Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3721 107 2e-18 >seq3721 Length=43933 Score = 107 bits (118), Expect = 2e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || ||||| ||||| |||||||| || | || ||| || ||||| Sbjct 40562 AGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCT 40503 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || || ||||| |||| || || |||||||| |||||||| || || || ||| Sbjct 40502 TCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGAATGCCCTCCTTATCT 40443 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | ||||| | || || || | ||| | |||| Sbjct 40442 TGGATCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTC 40383 Query 64412 TTGCCGGTCAAAGTTTTTACGA 64433 |||||||| | ||| || |||| Sbjct 40382 TTGCCGGTGAGAGTCTTGACGA 40361 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||||||||||||||| || | | || || | || || |||||||| || Sbjct 40775 GTCGACTCTTTTTGAATGTTGTAGTCGGATAGAGTACGGCCATCCTCGAGCTGCTTACCA 40716 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || || |||||||| || || || || || || ||||| ||||| |||| Sbjct 40715 GCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGGATTTTCGACTTT 40656 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | || || || | || | |||||| ||||| | || Sbjct 40655 ACATTGTCGATGGTGTCTGACGACTCAACCTCCAATGTGATGGTCTTTCCGGTAAGGGTC 40596 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 40595 TTGACGAAGATTTGCAT 40579 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | || || ||||| | || || || ||||| |||||||| || Sbjct 40293 ACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCT 40234 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || ||||||||||||||||||| || | || | ||||| ||||| || || Sbjct 40233 CAAGGTACGACCGTCTTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGG 40174 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || || || || || ||| || || | || || | || || || Sbjct 40173 AATTCCCTCCTTATCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCGCTGGACTCAAC 40114 Query 64396 TTCTACAGTTACGGTCTTGCCGGT 64419 || | ||| | |||||||||||| Sbjct 40113 CTCGAGAGTGATGGTCTTGCCGGT 40090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499620598455000