Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq68 174 2e-38 >seq68 Length=8748 Score = 174 bits (192), Expect = 2e-38 Identities = 270/386 (70%), Gaps = 0/386 (0%) Strand=Plus/Minus Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038 || |||| ||| | ||||||| ||||| | || || ||| |||| || || ||||| Sbjct 3949 GGTATTTACGATACCCTCAAGACGTGTGCTATGATTTCCAAAAACGCCGGTGGCATCGGT 3890 Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098 ||| | ||| | ||||| | ||| ||||||| |||||||||||| | |||| Sbjct 3889 CTCAACATTCACAGAATCCGTGCTACTGGTGCCTACATTGCCGGTACCAATGGTAACTCC 3830 Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158 || || | || |||||||| || || |||||||| | ||| | || || ||||||||| Sbjct 3829 AATGGTATTGTGCCTATGCTACGAGTTTTCAACAATACTGCGAGATATGTTGACCAGGGT 3770 Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218 || | | | ||| | || || |||| || ||||| |||||||| ||||| Sbjct 3769 GGAAACAAGCGTCCTGGTGCATTTGCAATCTACCTTGAGCCTTGGCACGCAGACGTTTTC 3710 Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278 | || | ||||| |||||||||||||| || || | | ||| | || |||||| Sbjct 3709 GAGTTTCTGGACCTCCGAAAGAACCACGGTAAGGAAGAAGTCCGCGCCCGTGATCTCTTC 3650 Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGT 94338 |||||| | ||| | || || || |||||||| || ||||| || ||| | ||||| Sbjct 3649 TACGCTTTGTGGATTCCGGATCTCTTTATGAAGCGTGTCGAAAAGAACGGAGACTGGACA 3590 Query 94339 CTTTTTTGTCCCAATGAATGTCCCGG 94364 || | |||||||| ||||| || || Sbjct 3589 CTGATGTGTCCCAACGAATGCCCTGG 3564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494699236845000