Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq3755 93.3 3e-14 seq3721 82.4 5e-11 >seq3755 Length=35748 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || ||||| |||||||| ||| || | | | ||||| Sbjct 18307 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 18366 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| ||||| ||| | |||||||| ||||| || |||||||| |||||||| Sbjct 18367 AGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGGAATTCCCTCCTTGTCCTGG 18426 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| | || || ||||| ||| || || | ||| ||||||||| Sbjct 18427 ATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTA 18486 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || || || ||||| Sbjct 18487 CCCGTGAGGGTCTTGACGAAGATCTGCAT 18515 >seq3721 Length=43933 Score = 82.4 bits (90), Expect = 5e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || ||||| || ||||| |||||||| ||||| | | | ||||||| | || Sbjct 40269 ATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAGGTACGACCGTCTTCAAGCTG 40210 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||| ||| | ||||| ||||||||||| |||||||| ||||| || || || Sbjct 40209 CTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGGATCTT 40150 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| || || | || || || ||||| || || || | || ||||| || || || Sbjct 40149 GCTCTTGACGTTGTCGATGGTGTCGCTGGACTCAACCTCGAGAGTGATGGTCTTGCCGGT 40090 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || |||||| || || || ||||| ||||| || |||| | || || Sbjct 41015 ACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCAGACAGTGTTCTGCCATCCTCC 40956 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || || |||||| | ||||| ||||||||||| ||| || || |||||||| Sbjct 40955 AACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGG 40896 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || || | || || ||||| | ||| || || || |||||||| || Sbjct 40895 ATCTTTGACTTGACGTTATCAATGGTATCCGAAGATTCCACTTCCAACGTAATGGTCTTT 40836 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| ||| || || || || |||||| Sbjct 40835 CCGGTCAAAGTCTTGACGAAGATCTGCATA 40806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357375121604375