Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq3721 114 1e-20
>seq3721
Length=43933
Score = 114 bits (126), Expect = 1e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || |||||||||||||| || || ||| || |||| || || | ||||
Sbjct 40553 TGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCGAGTTGT 40494
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || ||| | |||| |||||||||||||| |||||||| || |||||||| || ||
Sbjct 40493 TTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGGATCTTA 40434
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
|||| || | ||| |||||||| ||||| || ||||| | || ||||||||
Sbjct 40433 GACTTGACATTGTCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTCTTGCCGGTG 40374
Query 45318 AGAGTTTTTAC 45328
||||| || ||
Sbjct 40373 AGAGTCTTGAC 40363
Score = 95.1 bits (104), Expect = 1e-14
Identities = 134/186 (72%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| ||||| || || || ||||||||||| || || ||||| | ||| | || ||
Sbjct 40274 ACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAGGTACGACCGTCTTCA 40215
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| || || |||||| | ||||| || || |||||||| ||||| || || ||||| ||
Sbjct 40214 AGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGG 40155
Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|| || |||| || | || | ||||||| ||||| || |||||||| | || ||
Sbjct 40154 ATCTTGCTCTTGA-CGTTGTCGATGGTGTCGCTGGACTCAACCTCGAGAGTGATGGTCTT 40096
Query 45311 GCCGGT 45316
||||||
Sbjct 40095 GCCGGT 40090
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451981306095000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |