Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3721 114 1e-20 >seq3721 Length=43933 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || || ||| || |||| || || | |||| Sbjct 40553 TGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCGAGTTGT 40494 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||| |||||||||||||| |||||||| || |||||||| || || Sbjct 40493 TTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGGATCTTA 40434 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | ||| |||||||| ||||| || ||||| | || |||||||| Sbjct 40433 GACTTGACATTGTCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTCTTGCCGGTG 40374 Query 45318 AGAGTTTTTAC 45328 ||||| || || Sbjct 40373 AGAGTCTTGAC 40363 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || ||||||||||| || || ||||| | ||| | || || Sbjct 40274 ACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAGGTACGACCGTCTTCA 40215 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || |||||| | ||||| || || |||||||| ||||| || || ||||| || Sbjct 40214 AGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGG 40155 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | || | ||||||| ||||| || |||||||| | || || Sbjct 40154 ATCTTGCTCTTGA-CGTTGTCGATGGTGTCGCTGGACTCAACCTCGAGAGTGATGGTCTT 40096 Query 45311 GCCGGT 45316 |||||| Sbjct 40095 GCCGGT 40090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451981306095000