Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq68 118 1e-21 >seq68 Length=8748 Score = 118 bits (130), Expect = 1e-21 Identities = 525/820 (64%), Gaps = 21/820 (3%) Strand=Plus/Plus Query 116471 CAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTT 116530 ||| ||| || | |||||| || |||| ||| || || ||||||||| | |||||||| Sbjct 3328 CAGAGTATTCGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTT 3387 Query 116531 GATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTT 116590 | || ||| | || || ||||||||||| ||||| |||| | || ||||| |||| Sbjct 3388 GGTTGCTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTT 3447 Query 116591 GGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTG---GCTCGCC 116647 | | || |||||| | | ||| | | |||| | ||| ||| ||| | Sbjct 3448 GAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTTTTGCGACCTCTAC 3504 Query 116648 CCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCC 116707 | |||| ||| || | ||||| || || || || || || | || | | || Sbjct 3505 CTTCCTTCTCATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCAACC 3564 Query 116708 CTGGTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 116766 | || || || | ||||| | || | ||| | || || || || |||||||| Sbjct 3565 CAGG-GCATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATA 3623 Query 116767 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 116826 ||||| || || ||||| | || |||||||||| || ||| ||||||| | || Sbjct 3624 AAGAGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCG 3683 Query 116827 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 116886 || || || | |||| ||| || | | || |||||||| || || ||||| | Sbjct 3684 TGGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATT 3743 Query 116887 GCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTA 116940 || | || || | |||| ||| |||||| ||||| ||||| || ||| Sbjct 3744 GCAAATGCACCAGGACGCTTG---TTTCCACCCTGGTCAACATATCTCGCAGTATTGTTG 3800 Query 116941 AATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT-ACGAGA 116999 || || || ||||| || | ||||||| || | ||||| || || ||| | | Sbjct 3801 AAAACTCGTAGCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCA 3860 Query 117000 CTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 117059 | | | || | || ||| |||| | ||| || || || || || || || Sbjct 3861 CCAG-TAGCACGGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCAT 3919 Query 117060 TGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAG 117119 || ||| | |||| | |||| || |||||||| || |||| | | ||||| Sbjct 3920 AGCACACGTCTTGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAG 3979 Query 117120 GAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTG 117179 |||||| || | ||| | ||||||||||||| ||| || || || | ||||| Sbjct 3980 GAAGCATGATGAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTG 4039 Query 117180 GATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCC 117238 | |||| || | | ||||||| | ||||||||| | | || || || || | Sbjct 4040 GGTGAA-GTATTTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCAC 4098 Query 117239 CGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 |||||||||| | | || ||||| | ||| | ||| || Sbjct 4099 CGTGAATACCAACGGCAACACGCATGATCATTTGTTGTGG 4138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613477483245000