Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq68 98.7 2e-15 seq485 87.8 3e-12 >seq68 Length=8748 Score = 98.7 bits (108), Expect = 2e-15 Identities = 209/303 (69%), Gaps = 8/303 (3%) Strand=Plus/Plus Query 205094 CCGTACACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACA-TCTGATC 205152 ||||| || || || ||| || |||| |||||||||||||| | ||| || | || Sbjct 3546 CCGTATACATCAGCCAACCCAGGGCATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTC 3605 Query 205153 GTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGC 205212 | || || | || |||||| || || ||||||| |||| || ||||||||||| Sbjct 3606 TT-TTCGACACGCTTCATAAAGAGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGC 3664 Query 205213 CCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTG 205272 | | | | || | || |||||||| | |||||| | | || ||| ||||| Sbjct 3665 GCGGACTTCTTCCTTACCGTGGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTG 3724 Query 205273 CCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCAC-CA 205331 ||| ||||| | | | || | ||| || || | |||||| ||||||||||| || | Sbjct 3725 CCAAGGCTCAAGGTAGATTGCAAATGCACCAGGACGCTTGTTTCCACCCTGGTCAACATA 3784 Query 205332 T-GCG-AGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTT 205389 | || ||| || |||||||||||| ||||| ||||| | ||| |||| | | || || Sbjct 3785 TCTCGCAGT-AT--TGTTGAAAACTCGTAGCATAGGCACAATACCATTGGAGTTACCATT 3841 Query 205390 CGT 205392 || Sbjct 3842 GGT 3844 >seq485 Length=41282 Score = 87.8 bits (96), Expect = 3e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || |||||||| || |||||| ||| || || ||||| || ||||||| ||| ||||| Sbjct 7169 AAAAGGAGGCATGCGAAGTCGGTGTGAAGACCTTCGTCACGGGAGATGAGCTCATTGGAG 7110 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | |||| || | ||| | ||||| |||||||| || || | || || | || Sbjct 7109 AAAGTGAGACCAGCCATCAAGCCACGTTTCTTGAGCCAGAAGATAGAGGCGAATGATCCA 7050 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || || || || || || || || ||||| || || || | | | | || | | ||| Sbjct 7049 CTGAAGAAAATTCCTTCAACAGCAGCAAAAGCAACTAGGCGTTGAGCGAAGGTAGAGTTT 6990 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTT 160131 |||| || |||| || ||||| ||||||||||| Sbjct 6989 TTGTCTTGAATCCATCTGACAGCCCAGTCAGCCTTCTT 6952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795116684670000