Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq3721 122 2e-22
seq3755 120 7e-22
seq68 100 7e-16
seq542 87.8 4e-12
>seq3721
Length=43933
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| || |||||||| ||||||||||||| ||||||||| ||| ||
Sbjct 40286 CGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAGGTA 40227
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || ||||| |||||||| || |||||||| | ||||| |||||||| ||||||
Sbjct 40226 CGACCGTCTTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCC 40167
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| ||| |||| |||||| | | || || || |
Sbjct 40166 TCCTTATCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCGCTGGACTCAACCTCGAGA 40107
Query 199589 GTGATCGTCTTACCCGT 199605
||||| ||||| || ||
Sbjct 40106 GTGATGGTCTTGCCGGT 40090
Score = 107 bits (118), Expect = 5e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | ||| ||||| || |||||||||| ||||||||| | | ||
Sbjct 40571 CGAAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTT 40512
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || ||||| || || || |||||||| || ||||| |||||||||||| ||| ||
Sbjct 40511 CGGCCGTCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGAATGCCC 40452
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || || ||||| ||| || |||| ||| || | | ||| || || |
Sbjct 40451 TCCTTATCTTGGATCTTAGACTTGACATTGTCGATGGTATCGGAAGATTCGACCTCAAGA 40392
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617
||||| ||||| || |||||||| || ||
Sbjct 40391 GTGATGGTCTTGCCGGTGAGAGTCTTGAC 40363
Score = 107 bits (118), Expect = 5e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || |||||||| ||||| | ||||||||| | | ||| | |||||
Sbjct 40790 AGAACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGATAGAGTACGGCCATCC 40731
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || || ||||| ||||| ||||||||||| || || || ||
Sbjct 40730 TCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 40671
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| || || ||| || |||| |||||||| | || || ||||| ||||| |||
Sbjct 40670 TGGATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCAACCTCCAATGTGATGGTC 40611
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || || || || |||||
Sbjct 40610 TTTCCGGTAAGGGTCTTGACGAAGATTTG 40582
>seq3755
Length=35748
Score = 120 bits (132), Expect = 7e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | ||| ||||| ||||||||||||| ||||||||| | | || | |||||||
Sbjct 18304 AGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 18363
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || ||||| ||||||||||| | ||| || || || || |||||| || |||
Sbjct 18364 TCGAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCAGGGGGAATTCCCTCCTTGTCC 18423
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| ||| || | | ||| || || | ||||| ||
Sbjct 18424 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 18483
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||||||||| || || || || || ||
Sbjct 18484 TTACCCGTGAGGGTCTTGACGAAGATCTG 18512
>seq68
Length=8748
Score = 100 bits (110), Expect = 7e-16
Identities = 169/245 (69%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 167768 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 167827
|| |||||||| | ||||| || | || ||| | ||||||| | | |||| || |
Sbjct 3408 GCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGAATGGAGTAC 3467
Query 167828 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 167887
||||| | ||||||||| | ||| | | |||| ||||| || || || |||||||||
Sbjct 3468 CAAAGCTTTTGGGCTTTGATGGTTTTGCGACCTCTACCTTCCTTCTCATAACTCTCATAG 3527
Query 167888 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 167947
|| ||||||| || | ||||| | || | | || || ||| || ||||| |
Sbjct 3528 AGAGCTTCGAATTCATCGCCGTATACATCAGCCAACCCAGGGCATTCGTTGGGACACATC 3587
Query 167948 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCG 168007
|| |||| | ||| | | ||||| | |||||| ||||| || | | |||| | |||
Sbjct 3588 AGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAATCCACAAAGCG 3647
Query 168008 TAGAA 168012
|||||
Sbjct 3648 TAGAA 3652
>seq542
Length=29042
Score = 87.8 bits (96), Expect = 4e-12
Identities = 128/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
||||||||| ||||||||| | | || | |||||| || || ||||||||||||||||
Sbjct 10250 CCTTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCATCCTCAAGTTGCTTTCCGGCGAAGA 10191
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| | ||| || || ||||| |||||| || ||||| ||||| ||| || |
Sbjct 10190 TCAAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 10131
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
| | ||| || | | || || || | ||||| ||||| ||||| || || || || |
Sbjct 10130 CAATGGTATCGGAAGACTCCACCTCAAGGGTGATAGTCTTTCCCGTAAGGGTCTTGACGA 10071
Query 199620 A 199620
|
Sbjct 10070 A 10070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178863068384625
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |