Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3755 122 1e-22 seq3721 116 4e-21 >seq3755 Length=35748 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| || ||||| | || ||||| |||||||||||||| Sbjct 18324 CTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAA 18383 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || || || || | || | | |||||||||| |||||| ||||| | Sbjct 18384 GATCAAACGTTGTTGATCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATT 18443 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || || ||||| || || | ||||||||||| ||||| || || || || Sbjct 18444 GTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTGAC 18503 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 18504 GAAGATCTGCAT 18515 >seq3721 Length=43933 Score = 116 bits (128), Expect = 4e-21 Identities = 139/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||||||||| ||||||||| | || || |||| || Sbjct 40274 ACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAGGTACGACCGTCTTCA 40215 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| ||||||||||| ||||| | || | | |||||| ||| | Sbjct 40214 AGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGG 40155 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||||| ||| | | | |||||||| || || || || | |||||||| || Sbjct 40154 ATCTTGCTCTTGA-CGTTGTCGATGGTGTCGCTGGACTCAACCTCGAGAGTGATGGTCTT 40096 Query 46564 GCCCGT 46569 ||| || Sbjct 40095 GCCGGT 40090 Score = 102 bits (112), Expect = 9e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||| ||| ||| ||||| || ||||||||||||||||| || | || ||| Sbjct 40787 ACCAAGTGCAGTGTCGACTCTTTTTGAATGTTGTAGTCGGATAGAGTACGGCCATCCTCG 40728 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || || | || |||||||| | || | | |||||| || | Sbjct 40727 AGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 40668 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || ||| ||| | | | | ||||| ||| || || |||| |||||||| || Sbjct 40667 ATTTTCGACTTTACATTGTCGATGGTGTCTGACGACTCAACCTCCAATGTGATGGTCTTT 40608 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||||||||| Sbjct 40607 CCGGTAAGGGTCTTGACGAAGATTTGCAT 40579 Score = 102 bits (112), Expect = 9e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| |||| ||||||||||| ||||| || || || || || || | | Sbjct 41022 ACGAAGCACCAAGTGCAGGGTACTCTCCTTCTGGATGTTATAATCAGACAGTGTTCTGCC 40963 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | |||||| || ||||| ||||| ||||| ||||| | || | | |||||| Sbjct 40962 ATCCTCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTT 40903 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| | | | || || |||||||| |||| ||| || Sbjct 40902 GTCTTGGATCTTTGACTTGACGTTATCAATGGTATCCGAAGATTCCACTTCCAACGTAAT 40843 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || |||| || || || ||||| ||||| Sbjct 40842 GGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 40807 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||||||||| || || || |||| ||||| || || |||||||| Sbjct 40541 TCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAA 40482 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| || |||||||| | || | || |||||| || |||||| ||||| | Sbjct 40481 ATCAGACGTTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGGATCTTAGACTTGACATTG 40422 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || ||| ||||| || || | |||||||| ||||| || || || || || Sbjct 40421 TCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTCTTGAC 40363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565211021265000