Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq485 145 8e-30 seq3755 123 2e-23 seq3721 122 9e-23 >seq485 Length=41282 Score = 145 bits (160), Expect = 8e-30 Identities = 198/276 (72%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||||||| ||||| |||| ||||| | ||||||||| ||||| || Sbjct 6835 GTAGGTGTCGATGAGGAGAGAATATGTTTCGGAGTGGATGTTCTCCATCATAATTTGGAA 6776 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| || |||||| | || ||||| | ||| |||||||| || || Sbjct 6775 ACCGTAGAAGCAACGGGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACGAGGTT 6716 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||| || || |||||| || ||||| || || || ||||| |||||| | ||| Sbjct 6715 TTCGTTAACAATTCCGTCGGATGCTGCGAAGAATGCGAGTACGTGAGAGATGAAGTAGCG 6656 Query 133347 CTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | || || | | | |||||| | |||||| |||| ||| | ||| || Sbjct 6655 CTCATCATCATTGAGTCTGTTGTTCCAGTCATGAAGGTCCTTTGACAAGTCGATCTCTTC 6596 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || |||||||| ||||| ||||| Sbjct 6595 TGCCGTCCAGAAGGATGCCTCGGCCTTTTTATACAT 6560 >seq3755 Length=35748 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| |||||||||||| |||| || || || | Sbjct 18515 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 18456 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || |||| ||||| |||||||||||| | || ||| Sbjct 18455 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAA 18396 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| ||||| || || || || | |||||||| |||||||||| Sbjct 18395 CAACGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 18336 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| | || || || ||||| || ||| Sbjct 18335 ATCCAAAAGGAGTCCACTCTTCACTTGGTCCTTCGT 18300 >seq3721 Length=43933 Score = 122 bits (134), Expect = 9e-23 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| |||||||| |||| || ||| ||| ||||| | | | |||| | |||| Sbjct 40090 ACCGGCAAGACCATCACTCTCGAGGTTGAGTCCAGCGACACCATCGACAACG--TCAAGA 40147 Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| || || |||||||||||| | ||||||||||| | || | ||| |||| Sbjct 40148 GCAAGATCCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCA 40207 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | ||||| || |||| || ||| | | ||||||||||||||||||||| | || || | Sbjct 40208 AGCAGCTTGAAGACGGTCGTACCTTGAGCGACTACAACATCCAAAAGGAGTCTACTCTCC 40267 Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470 || | || || ||| | | ||||| Sbjct 40268 ATCTCGTCCTCCGTCTTCGTGGCGG 40292 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| |||||||| | || ||||| | |||| | | | Sbjct 40361 TCGTCAAGACTCTCACCGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCG 40420 Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 | | | || || |||| || || ||||| ||||| | ||||| || || || | Sbjct 40421 ACAATGTCAAGTCTAAGATCCAAGATAAGGAGGGCATTCCTCCGGACCAGCAACGTCTGA 40480 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 ||| ||| || ||||| || || |||| || |||||| |||||||||||||||||||| Sbjct 40481 TTTTCGCCGGTAAACAACTCGAAGACGGCCGAACCCTCTCCGACTACAACATCCAAAAGG 40540 Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459 || | || || || |||||||| ||| Sbjct 40541 AATCTACTCTTCACTTGGTGCTCCGT 40566 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || |||||||| | || || ||| | | Sbjct 40579 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 40638 Query 38304 GACAGCGTGCA-AACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | ||||| ||||||| || || ||||| || || | |||| Sbjct 40639 GACACCATCGACAATG--TAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACC 40696 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || || | || || || ||||| || || | || || || |||||||| Sbjct 40697 AGCAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACA 40756 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||| ||||| || |||| ||||| ||||| || ||| Sbjct 40757 ACATTCAAAAAGAGTCGACACTGCACTTGGTTCTTCGT 40794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500148572880000