Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq485 145 8e-30
seq3755 123 2e-23
seq3721 122 9e-23
>seq485
Length=41282
Score = 145 bits (160), Expect = 8e-30
Identities = 198/276 (72%), Gaps = 3/276 (1%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
|||||||||||||||| ||||| |||| ||||| | ||||||||| ||||| ||
Sbjct 6835 GTAGGTGTCGATGAGGAGAGAATATGTTTCGGAGTGGATGTTCTCCATCATAATTTGGAA 6776
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||||| ||||| || |||||| | || ||||| | ||| |||||||| || ||
Sbjct 6775 ACCGTAGAAGCAACGGGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACGAGGTT 6716
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||| || || |||||| || ||||| || || || ||||| |||||| | |||
Sbjct 6715 TTCGTTAACAATTCCGTCGGATGCTGCGAAGAATGCGAGTACGTGAGAGATGAAGTAGCG 6656
Query 133347 CTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | || || | | | |||||| | |||||| |||| ||| | ||| ||
Sbjct 6655 CTCATCATCATTGAGTCTGTTGTTCCAGTCATGAAGGTCCTTTGACAAGTCGATCTCTTC 6596
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||| || || |||||||| ||||| |||||
Sbjct 6595 TGCCGTCCAGAAGGATGCCTCGGCCTTTTTATACAT 6560
>seq3755
Length=35748
Score = 123 bits (136), Expect = 2e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || |||||||| |||||||||||| |||| || || || |
Sbjct 18515 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 18456
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || || |||| ||||| |||||||||||| | || |||
Sbjct 18455 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAA 18396
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || | || | ||| ||||| || || || || | |||||||| ||||||||||
Sbjct 18395 CAACGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 18336
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||||||||| | || || || ||||| || |||
Sbjct 18335 ATCCAAAAGGAGTCCACTCTTCACTTGGTCCTTCGT 18300
>seq3721
Length=43933
Score = 122 bits (134), Expect = 9e-23
Identities = 152/205 (74%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|| ||||| |||||||| |||| || ||| ||| ||||| | | | |||| | ||||
Sbjct 40090 ACCGGCAAGACCATCACTCTCGAGGTTGAGTCCAGCGACACCATCGACAACG--TCAAGA 40147
Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
|| |||| || || |||||||||||| | ||||||||||| | || | ||| ||||
Sbjct 40148 GCAAGATCCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCA 40207
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445
| ||||| || |||| || ||| | | ||||||||||||||||||||| | || || |
Sbjct 40208 AGCAGCTTGAAGACGGTCGTACCTTGAGCGACTACAACATCCAAAAGGAGTCTACTCTCC 40267
Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| | || || ||| | | |||||
Sbjct 40268 ATCTCGTCCTCCGTCTTCGTGGCGG 40292
Score = 114 bits (126), Expect = 1e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || ||||| ||||| |||||||| | || ||||| | |||| | | |
Sbjct 40361 TCGTCAAGACTCTCACCGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCG 40420
Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373
| | | || || |||| || || ||||| ||||| | ||||| || || || |
Sbjct 40421 ACAATGTCAAGTCTAAGATCCAAGATAAGGAGGGCATTCCTCCGGACCAGCAACGTCTGA 40480
Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433
||| ||| || ||||| || || |||| || |||||| ||||||||||||||||||||
Sbjct 40481 TTTTCGCCGGTAAACAACTCGAAGACGGCCGAACCCTCTCCGACTACAACATCCAAAAGG 40540
Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459
|| | || || || |||||||| |||
Sbjct 40541 AATCTACTCTTCACTTGGTGCTCCGT 40566
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || || || |||||||| | || || ||| | |
Sbjct 40579 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 40638
Query 38304 GACAGCGTGCA-AACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | | || | ||||| ||||||| || || ||||| || || | ||||
Sbjct 40639 GACACCATCGACAATG--TAAAGTCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACC 40696
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| || || || || | || || || ||||| || || | || || || ||||||||
Sbjct 40697 AGCAACGTCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTATCCGACTACA 40756
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||| ||||| || |||| ||||| ||||| || |||
Sbjct 40757 ACATTCAAAAAGAGTCGACACTGCACTTGGTTCTTCGT 40794
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500148572880000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |