Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3536 143 1e-28 seq3755 125 3e-23 seq1915 111 6e-19 seq3721 107 8e-18 seq542 105 3e-17 >seq3536 Length=11727 Score = 143 bits (158), Expect = 1e-28 Identities = 203/286 (71%), Gaps = 11/286 (4%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || |||||||||| || || ||||| || ||||||| |||||||| ||||||| Sbjct 7395 ATGCTGTTGTTACTGTTCCGGCATACTTCAACGACTCACAACGTCAAGCAACGAAAGATG 7454 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 |||| || || |||||||| || ||||| || | | || ||||| || || || || | Sbjct 7455 CAGGTCAAATCGCTGGTTTGAACGTTCTCAGAGTAGTCAACGAACCAACTGCTGCCGCAC 7514 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGAT 451498 | || || || || | ||||| | || || || | |||| |||| ||| Sbjct 7515 TCGCCTACGGCCTCG----------AGAAAGACGAGGATAAGATTATTGCCGTATACGAT 7564 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 || ||||||||||| |||| ||||| ||| ||| || | || || || || || Sbjct 7565 TTGGGTGGAGGAACCTTCGATATCTCTGTTCTTGAAATCCAAAAGGGTGTTTTCGAGGTC 7624 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604 ||| | ||||||||||| || || | ||||||||||| | |||| Sbjct 7625 AAGTCCACCAATGGTGACACCCACTTGGGAGGTGAAGACTTCGATA 7670 >seq3755 Length=35748 Score = 125 bits (138), Expect = 3e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || |||||||| || || || || |||||||| ||| Sbjct 18515 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 18456 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | | || || || || || ||||| |||||||| ||||||||| Sbjct 18455 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAA 18396 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| || ||| | || || ||||| ||||||||| | || | | || || || Sbjct 18395 CAACGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 18336 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 18335 ATCCAAAAGGAGTCCACTCTTCACTTGGT 18307 >seq1915 Length=29644 Score = 111 bits (122), Expect = 6e-19 Identities = 240/354 (68%), Gaps = 5/354 (1%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAA-ATGAAAGAAACAGCAGAACAATATAT 451302 || |||||||||||||||||||| ||| | || |||| || || || || || | Sbjct 24841 CCAGAAGAAATTTCATCTATGGT-CTTGGTCAAGATGAGGGAGACTGCTGAGGCTTACCT 24783 Query 451303 TGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACG 451362 |||| | || | | || || | ||||| || ||||| |||| |||| | ||| | Sbjct 24782 TGGTGGAACTGTCAACAACGCTGTCGTCACTGTCCCAGCTTACTTCACTGATTCGCAAAG 24723 Query 451363 GCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGA 451422 ||||| || ||||||||||| | || |||||| | || ||||| || || || || || Sbjct 24722 ACAAGCTACGAAAGATGCAGGCCTGATCGCTGGTCTCAACGTTCTCCGTATCATCAACGA 24663 Query 451423 ACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaa 451482 ||||| ||||| ||| | || || || | ||| || || | | || ||| Sbjct 24662 GCCTACCGCAGCAGCTATTGCTTACGG-TTTGGACAA--GAAGGTTGAGGGTGAGCGAAA 24606 Query 451483 TATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGA 451542 | | | || ||| |||||||||||||| ||| |||| | | | ||||| || Sbjct 24605 CGTCCTCATCTTCGATCTTGGTGGAGGAACTTTCGATGTTTCTCTCTTGACCATTGAGGA 24546 Query 451543 TGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 || | |||||||| ||| | ||| |||||| ||||| | || ||||| || Sbjct 24545 GGGTATCTTTGAAGTCAAGTCCACCGCTGGTGACACTCACTTGGGTGGTGAGGA 24492 >seq3721 Length=43933 Score = 107 bits (118), Expect = 8e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119 |||| || || || || || || || || |||||||| || ||||| || |||| ||| | Sbjct 40361 TCGTCAAGACTCTCACCGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCG 40420 Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179 | | | || || || ||||||||||| || |||||||| || || |||||| | | Sbjct 40421 ACAATGTCAAGTCTAAGATCCAAGATAAGGAGGGCATTCCTCCGGACCAGCAACGTCTGA 40480 Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGG 391239 ||||| | || |||||||| ||||| || |||| | | || || || || | |||| Sbjct 40481 TTTTCGCCGGTAAACAACTCGAAGACGGCCGAACCCTCTCCGACTACAACATCCAAAAGG 40540 Query 391240 ATGCAACACTTCACTTAGT 391258 | | || |||||||| || Sbjct 40541 AATCTACTCTTCACTTGGT 40559 >seq542 Length=29042 Score = 105 bits (116), Expect = 3e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 |||| ||||| || || || || || || ||||| || ||||| || || || || ||| Sbjct 10064 AATAGCTTCGTCAAGACCCTTACGGGAAAGACTATCACCCTTGAGGTGGAGTCTTCCGAT 10123 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | |||||| | | || || || || || ||||| |||||||| || ||||||||| Sbjct 10124 ACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGATCAACAA 10183 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAAC 391213 ||||| || ||| | || || |||||||| |||||| |||| Sbjct 10184 CGTTTGATCTTCGCCGGAAAGCAACTTGAGGATGGACGAAC 10224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975620308668500