Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq3536 143 1e-28
seq3755 125 3e-23
seq1915 111 6e-19
seq3721 107 8e-18
seq542 105 3e-17
>seq3536
Length=11727
Score = 143 bits (158), Expect = 1e-28
Identities = 203/286 (71%), Gaps = 11/286 (4%)
Strand=Plus/Plus
Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379
|||| || |||||||||| || || ||||| || ||||||| |||||||| |||||||
Sbjct 7395 ATGCTGTTGTTACTGTTCCGGCATACTTCAACGACTCACAACGTCAAGCAACGAAAGATG 7454
Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439
|||| || || |||||||| || ||||| || | | || ||||| || || || || |
Sbjct 7455 CAGGTCAAATCGCTGGTTTGAACGTTCTCAGAGTAGTCAACGAACCAACTGCTGCCGCAC 7514
Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGAT 451498
| || || || || | ||||| | || || || | |||| |||| |||
Sbjct 7515 TCGCCTACGGCCTCG----------AGAAAGACGAGGATAAGATTATTGCCGTATACGAT 7564
Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558
|| ||||||||||| |||| ||||| ||| ||| || | || || || || ||
Sbjct 7565 TTGGGTGGAGGAACCTTCGATATCTCTGTTCTTGAAATCCAAAAGGGTGTTTTCGAGGTC 7624
Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604
||| | ||||||||||| || || | ||||||||||| | ||||
Sbjct 7625 AAGTCCACCAATGGTGACACCCACTTGGGAGGTGAAGACTTCGATA 7670
>seq3755
Length=35748
Score = 125 bits (138), Expect = 3e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || || || |||||||| || || || || |||||||| |||
Sbjct 18515 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 18456
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||| || | | || || || || || ||||| |||||||| |||||||||
Sbjct 18455 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAA 18396
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|||||||| || ||| | || || ||||| ||||||||| | || | | || || ||
Sbjct 18395 CAACGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 18336
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
|| | ||||| | || |||||||| ||
Sbjct 18335 ATCCAAAAGGAGTCCACTCTTCACTTGGT 18307
>seq1915
Length=29644
Score = 111 bits (122), Expect = 6e-19
Identities = 240/354 (68%), Gaps = 5/354 (1%)
Strand=Plus/Minus
Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAA-ATGAAAGAAACAGCAGAACAATATAT 451302
|| |||||||||||||||||||| ||| | || |||| || || || || || |
Sbjct 24841 CCAGAAGAAATTTCATCTATGGT-CTTGGTCAAGATGAGGGAGACTGCTGAGGCTTACCT 24783
Query 451303 TGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACG 451362
|||| | || | | || || | ||||| || ||||| |||| |||| | ||| |
Sbjct 24782 TGGTGGAACTGTCAACAACGCTGTCGTCACTGTCCCAGCTTACTTCACTGATTCGCAAAG 24723
Query 451363 GCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGA 451422
||||| || ||||||||||| | || |||||| | || ||||| || || || || ||
Sbjct 24722 ACAAGCTACGAAAGATGCAGGCCTGATCGCTGGTCTCAACGTTCTCCGTATCATCAACGA 24663
Query 451423 ACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaa 451482
||||| ||||| ||| | || || || | ||| || || | | || |||
Sbjct 24662 GCCTACCGCAGCAGCTATTGCTTACGG-TTTGGACAA--GAAGGTTGAGGGTGAGCGAAA 24606
Query 451483 TATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGA 451542
| | | || ||| |||||||||||||| ||| |||| | | | ||||| ||
Sbjct 24605 CGTCCTCATCTTCGATCTTGGTGGAGGAACTTTCGATGTTTCTCTCTTGACCATTGAGGA 24546
Query 451543 TGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596
|| | |||||||| ||| | ||| |||||| ||||| | || ||||| ||
Sbjct 24545 GGGTATCTTTGAAGTCAAGTCCACCGCTGGTGACACTCACTTGGGTGGTGAGGA 24492
>seq3721
Length=43933
Score = 107 bits (118), Expect = 8e-18
Identities = 143/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119
|||| || || || || || || || || |||||||| || ||||| || |||| ||| |
Sbjct 40361 TCGTCAAGACTCTCACCGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCG 40420
Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179
| | | || || || ||||||||||| || |||||||| || || |||||| | |
Sbjct 40421 ACAATGTCAAGTCTAAGATCCAAGATAAGGAGGGCATTCCTCCGGACCAGCAACGTCTGA 40480
Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGG 391239
||||| | || |||||||| ||||| || |||| | | || || || || | ||||
Sbjct 40481 TTTTCGCCGGTAAACAACTCGAAGACGGCCGAACCCTCTCCGACTACAACATCCAAAAGG 40540
Query 391240 ATGCAACACTTCACTTAGT 391258
| | || |||||||| ||
Sbjct 40541 AATCTACTCTTCACTTGGT 40559
>seq542
Length=29042
Score = 105 bits (116), Expect = 3e-17
Identities = 120/161 (75%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112
|||| ||||| || || || || || || ||||| || ||||| || || || || |||
Sbjct 10064 AATAGCTTCGTCAAGACCCTTACGGGAAAGACTATCACCCTTGAGGTGGAGTCTTCCGAT 10123
Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172
| |||||| | | || || || || || ||||| |||||||| || |||||||||
Sbjct 10124 ACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGATCAACAA 10183
Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAAC 391213
||||| || ||| | || || |||||||| |||||| ||||
Sbjct 10184 CGTTTGATCTTCGCCGGAAAGCAACTTGAGGATGGACGAAC 10224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975620308668500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |