Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq1915 145 6e-29
seq3536 105 5e-17
seq3023 87.8 1e-11
>seq1915
Length=29644
Score = 145 bits (160), Expect = 6e-29
Identities = 454/698 (65%), Gaps = 4/698 (1%)
Strand=Plus/Plus
Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074
|||||||| || || || || ||||| ||||| | ||| | || | || | | |||
Sbjct 24474 ACAAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACT 24533
Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134
| || | || || |||| | ||| |||| ||||| ||||| ||||| | |||
Sbjct 24534 TCAAAGATACCCTCCTCAATGGTCAAGAGAGAAACATCGAAAGTTCCTCCACCAAGATCG 24593
Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194
|| || || || || || || || || || | ||| || |||| ||| ||
Sbjct 24594 AAGATGAGGACGTTTCGCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATAGCTGCT 24653
Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254
|| || || || || || || | | ||| || |||||||| || |||||||||||
Sbjct 24654 GCGGTAGGCTCGTTGATGATACGGAGAACGTTGAGACCAGCGATCAGGCCTGCATCTTTC 24713
Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314
|| ||||||||||| ||||| | || || || || ||||| | || || | | ||
Sbjct 24714 GTAGCTTGTCTTTGCGAATCAGTGAAGTAAGCTGGGACAGTGACGACAGCGTTGTTGACA 24773
Query 518315 TCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 518374
| ||||| ||||| || || | |||| || || | ||| |||||||||
Sbjct 24774 GTTCCACCAAGGTAAGCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATAGATGAAATT 24833
Query 518375 TGTTCTGGGGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTATT 518433
| |||||| | ||||||| | || ||||| | ||||| | ||| ||
Sbjct 24834 TCTTCTGGTGTGAATTGCTTAGCCTCGCCTTTGA-ACTCGACTTCGATGACTGGCTTTCC 24892
Query 518434 ACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTG-GTCAT 518492
|| | || || || ||||| ||| ||||| || | ||||| || || |||
Sbjct 24893 GGCACGGTCGATGACCTTGAATGGGAAGTGCTTCATGTCCGCCTGAAC-CTCTGCGTCGG 24951
Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAG 518552
|| | | ||| || | || || ||||| || | || || || || || || ||
Sbjct 24952 CGAATTTACGACCGATCAGACGCTTAGCATCGAAGACTGTGTTTGTGGGGTTCATGGCGA 25011
Query 518553 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 518612
|||| | || || |||||||| |||||| | || || ||||| || | ||| | || |
Sbjct 25012 CTTGGTTCTTTGCGGCATCTCCGATCAGACGCTCGGTGTCTGTGAAGGCAACGAACGAAG 25071
Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672
||||||| || || ||||| || || || |||||||| | | | ||| | | | ||
Sbjct 25072 GAGTTGTTCGGTTTCCTTGGTCGTTGGCGATAATTTCGATTCTGTCATCACGGAAGATAC 25131
Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 518710
| ||||| | || || || ||||||||||| |||
Sbjct 25132 CCACACAGGAGTAGGTGGTACCCAAATCAATACCGATA 25169
Score = 105 bits (116), Expect = 5e-17
Identities = 248/370 (67%), Gaps = 7/370 (2%)
Strand=Plus/Plus
Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333
||||| |||||||| | || || ||||| |||||||| ||||| || | ||||||||
Sbjct 23333 ATACCGTTGGCATCAATGTCGAAGGTGACCTCAATTTGTGGGACACCGCGAGGAGCAGGT 23392
Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT--GAATTTTCGTT 517391
||||| || | | || |||| ||| ||| || || ||||| || || || |
Sbjct 23393 GGGATGCCGGTAAGCTCGAACTTTCCGAGAAGATTGTTGTCCTTAGTACGAGTTCTC--T 23450
Query 517392 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 517451
||||||| || | || ||| || ||| ||| || || || | || | || |||
Sbjct 23451 CACCCTCAAACACCTGAATAAGCACACCAGGTTGGTTGTCGGAGAAGGTAGAGAAGACTT 23510
Query 517452 TGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTG 517511
|| || || || || || ||||| | | ||||| |||||||| ||||| |
Sbjct 23511 CTGACTTCTTGGTTGGGATGGTGGTGTTGCGGTGAATAAGCTTGGTCATTTGTCCACCAG 23570
Query 517512 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTT 517569
| || || | ||| ||||| | || | ||| || | || | ||| | || | | |
Sbjct 23571 CAGTCTCGATACCCAGAGACAATGGCGCGACGTCGAGAAGAAGAATTTCGTTGGTGGACT 23630
Query 517570 TTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 517628
| || | || | |||| || ||||| || || | ||||||||| ||||||||||| |
Sbjct 23631 TGGATGAGGTGTCACCAGAGAGGATAGCAGCCTGGACAGCAGCACCGTATGCAACAGCCT 23690
Query 517629 CATCAGGATT 517638
|||| || ||
Sbjct 23691 CATCGGGGTT 23700
>seq3536
Length=11727
Score = 105 bits (116), Expect = 5e-17
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215
|| || | || ||| || || || || || | || |||||||||||||| || | | |
Sbjct 7545 TTATCCTCGTCTTTCTCGAGGCCGTAGGCGAGTGCGGCAGCAGTTGGTTCGTTGACTACT 7486
Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275
|| | ||| || | |||||| ||| ||||||||||| || ||||| | |||||| |||
Sbjct 7485 CTGAGAACGTTCAAACCAGCGATTTGACCTGCATCTTTCGTTGCTTGACGTTGTGAGTCG 7426
Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCAT 518306
|| || ||||| |||||||||| ||| ||||
Sbjct 7425 TTGAAGTATGCCGGAACAGTAACAACAGCAT 7395
>seq3023
Length=23922
Score = 87.8 bits (96), Expect = 1e-11
Identities = 160/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 671612 TCCAGAGGTTTTTGTCGA-AATTCTTTTATTGAGGGTCTTGGACCTTTTGAATTTTTCTT 671670
|| |||||||| ||||| ||||| | | || |||||| || ||| || |||||
Sbjct 13495 TCGAGAGGTTTC-GTCGAGAATTCATATCTTCGAGGTCTTACCCCCACTGAGTTCTTCTT 13553
Query 671671 CCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACTGCTGATACTGG 671730
||| | ||||| |||||||||||| | ||| |||| || | || || || || |||||
Sbjct 13554 CCACGCCATGGCTGGTCGTGAAGGTTTGATTGATACTGCAGTCAAGACCGCAGAAACTGG 13613
Query 671731 TTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGATATCAAACAAGAATATGATGGTAC 671790
|||||| ||| | ||||| || || |||||| | | |||||||||||||
Sbjct 13614 TTATATCCAACGTCGTCTTGTCAAGGCTCTTGAAGATGTTATGGCGAAATATGATGGTAC 13673
Query 671791 AGTAAGAAATGCAAATGGTAAACTTATATCATGTGTTTATGGTGATAATGGT 671842
||| |||| || ||| | | || | ||| |||||||| |||||
Sbjct 13674 AGTCCGAAACTCACTTGGCGACATCGTACAGTTTGTCTATGGTGAGGATGGT 13725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780630109735750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |