Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1915 145 6e-29 seq3536 105 5e-17 seq3023 87.8 1e-11 >seq1915 Length=29644 Score = 145 bits (160), Expect = 6e-29 Identities = 454/698 (65%), Gaps = 4/698 (1%) Strand=Plus/Plus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 |||||||| || || || || ||||| ||||| | ||| | || | || | | ||| Sbjct 24474 ACAAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACT 24533 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | || | || || |||| | ||| |||| ||||| ||||| ||||| | ||| Sbjct 24534 TCAAAGATACCCTCCTCAATGGTCAAGAGAGAAACATCGAAAGTTCCTCCACCAAGATCG 24593 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || || || || || || || || || || | ||| || |||| ||| || Sbjct 24594 AAGATGAGGACGTTTCGCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATAGCTGCT 24653 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || || || || || || || | | ||| || |||||||| || ||||||||||| Sbjct 24654 GCGGTAGGCTCGTTGATGATACGGAGAACGTTGAGACCAGCGATCAGGCCTGCATCTTTC 24713 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314 || ||||||||||| ||||| | || || || || ||||| | || || | | || Sbjct 24714 GTAGCTTGTCTTTGCGAATCAGTGAAGTAAGCTGGGACAGTGACGACAGCGTTGTTGACA 24773 Query 518315 TCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 518374 | ||||| ||||| || || | |||| || || | ||| ||||||||| Sbjct 24774 GTTCCACCAAGGTAAGCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATAGATGAAATT 24833 Query 518375 TGTTCTGGGGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTATT 518433 | |||||| | ||||||| | || ||||| | ||||| | ||| || Sbjct 24834 TCTTCTGGTGTGAATTGCTTAGCCTCGCCTTTGA-ACTCGACTTCGATGACTGGCTTTCC 24892 Query 518434 ACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTG-GTCAT 518492 || | || || || ||||| ||| ||||| || | ||||| || || ||| Sbjct 24893 GGCACGGTCGATGACCTTGAATGGGAAGTGCTTCATGTCCGCCTGAAC-CTCTGCGTCGG 24951 Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAG 518552 || | | ||| || | || || ||||| || | || || || || || || || Sbjct 24952 CGAATTTACGACCGATCAGACGCTTAGCATCGAAGACTGTGTTTGTGGGGTTCATGGCGA 25011 Query 518553 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 518612 |||| | || || |||||||| |||||| | || || ||||| || | ||| | || | Sbjct 25012 CTTGGTTCTTTGCGGCATCTCCGATCAGACGCTCGGTGTCTGTGAAGGCAACGAACGAAG 25071 Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672 ||||||| || || ||||| || || || |||||||| | | | ||| | | | || Sbjct 25072 GAGTTGTTCGGTTTCCTTGGTCGTTGGCGATAATTTCGATTCTGTCATCACGGAAGATAC 25131 Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 518710 | ||||| | || || || ||||||||||| ||| Sbjct 25132 CCACACAGGAGTAGGTGGTACCCAAATCAATACCGATA 25169 Score = 105 bits (116), Expect = 5e-17 Identities = 248/370 (67%), Gaps = 7/370 (2%) Strand=Plus/Plus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 ||||| |||||||| | || || ||||| |||||||| ||||| || | |||||||| Sbjct 23333 ATACCGTTGGCATCAATGTCGAAGGTGACCTCAATTTGTGGGACACCGCGAGGAGCAGGT 23392 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT--GAATTTTCGTT 517391 ||||| || | | || |||| ||| ||| || || ||||| || || || | Sbjct 23393 GGGATGCCGGTAAGCTCGAACTTTCCGAGAAGATTGTTGTCCTTAGTACGAGTTCTC--T 23450 Query 517392 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 517451 ||||||| || | || ||| || ||| ||| || || || | || | || ||| Sbjct 23451 CACCCTCAAACACCTGAATAAGCACACCAGGTTGGTTGTCGGAGAAGGTAGAGAAGACTT 23510 Query 517452 TGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTG 517511 || || || || || || ||||| | | ||||| |||||||| ||||| | Sbjct 23511 CTGACTTCTTGGTTGGGATGGTGGTGTTGCGGTGAATAAGCTTGGTCATTTGTCCACCAG 23570 Query 517512 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTT 517569 | || || | ||| ||||| | || | ||| || | || | ||| | || | | | Sbjct 23571 CAGTCTCGATACCCAGAGACAATGGCGCGACGTCGAGAAGAAGAATTTCGTTGGTGGACT 23630 Query 517570 TTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 517628 | || | || | |||| || ||||| || || | ||||||||| ||||||||||| | Sbjct 23631 TGGATGAGGTGTCACCAGAGAGGATAGCAGCCTGGACAGCAGCACCGTATGCAACAGCCT 23690 Query 517629 CATCAGGATT 517638 |||| || || Sbjct 23691 CATCGGGGTT 23700 >seq3536 Length=11727 Score = 105 bits (116), Expect = 5e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 || || | || ||| || || || || || | || |||||||||||||| || | | | Sbjct 7545 TTATCCTCGTCTTTCTCGAGGCCGTAGGCGAGTGCGGCAGCAGTTGGTTCGTTGACTACT 7486 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 || | ||| || | |||||| ||| ||||||||||| || ||||| | |||||| ||| Sbjct 7485 CTGAGAACGTTCAAACCAGCGATTTGACCTGCATCTTTCGTTGCTTGACGTTGTGAGTCG 7426 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || ||||| |||||||||| ||| |||| Sbjct 7425 TTGAAGTATGCCGGAACAGTAACAACAGCAT 7395 >seq3023 Length=23922 Score = 87.8 bits (96), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 671612 TCCAGAGGTTTTTGTCGA-AATTCTTTTATTGAGGGTCTTGGACCTTTTGAATTTTTCTT 671670 || |||||||| ||||| ||||| | | || |||||| || ||| || ||||| Sbjct 13495 TCGAGAGGTTTC-GTCGAGAATTCATATCTTCGAGGTCTTACCCCCACTGAGTTCTTCTT 13553 Query 671671 CCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACTGCTGATACTGG 671730 ||| | ||||| |||||||||||| | ||| |||| || | || || || || ||||| Sbjct 13554 CCACGCCATGGCTGGTCGTGAAGGTTTGATTGATACTGCAGTCAAGACCGCAGAAACTGG 13613 Query 671731 TTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGATATCAAACAAGAATATGATGGTAC 671790 |||||| ||| | ||||| || || |||||| | | ||||||||||||| Sbjct 13614 TTATATCCAACGTCGTCTTGTCAAGGCTCTTGAAGATGTTATGGCGAAATATGATGGTAC 13673 Query 671791 AGTAAGAAATGCAAATGGTAAACTTATATCATGTGTTTATGGTGATAATGGT 671842 ||| |||| || ||| | | || | ||| |||||||| ||||| Sbjct 13674 AGTCCGAAACTCACTTGGCGACATCGTACAGTTTGTCTATGGTGAGGATGGT 13725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780630109735750