Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq1915 329 4e-85
seq3366 141 1e-28
seq3536 107 2e-18
seq3845 89.7 7e-13
>seq1915
Length=29644
Score = 329 bits (364), Expect = 4e-85
Identities = 525/747 (70%), Gaps = 10/747 (1%)
Strand=Plus/Plus
Query 7401 TATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGA 7460
|| |||| || || || ||||| ||||| | |||||| || || | ||||
Sbjct 24430 TAACTTTTTTGTGCTTGCGTTTGAACTCATTTACGAAGTGGTTAACAAGACGGTTGTCGA 24489
Query 7461 AATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTT 7520
| || |||||||||||||| || || || ||||| | ||||||||||||||||| | |
Sbjct 24490 AGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACTTCAAAGATACCCTCCT 24549
Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCG 7580
||||| | || | |||||||| || || || ||||| || || || ||||| |||||
Sbjct 24550 CAATGGTCAAGAGAGAAACATCGAAAGTTCCTCCACCAAGATCGAAGATGAGGACGTTTC 24609
Query 7581 TATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAA 7640
|| | || ||||| || | |||||| || ||||| || || || || || || |
Sbjct 24610 GCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATAGCTGCTGCGGTAGGCTCGTTGA 24669
Query 7641 TAATACGAAGACAGTTCAGGCCAGCAAT-AGTTGCC-GCATCTTTCGTCGCTTGTCGTTG 7698
| ||||| ||| ||| || ||||| || || ||| ||||||||||| ||||||| |||
Sbjct 24670 TGATACGGAGAACGTTGAGACCAGCGATCAG--GCCTGCATCTTTCGTAGCTTGTCTTTG 24727
Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758
|||||| | ||||| || ||||| || ||||| |||| |||| | ||| || ||
Sbjct 24728 CGAATCAGTGAAGTAAGCTGGGACAGTGACGACAGCGTTGTTGACAGTTCCACCAAGGTA 24787
Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAA 7818
| || || | || |||| ||| | ||||| |||||||| ||||| | | ||
Sbjct 24788 AGCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATAGATGAAATTTCTTCTGGTGTGAA 24847
Query 7819 CTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGAT 7878
|| || | || || || || || ||||| || | || || |||| |||| | |||
Sbjct 24848 TTGCTTAGCCTCGCCTTTGAACTCGACTTCGATGACTGGCTT-TCCG--GCACGGTCGAT 24904
Query 7879 AACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCC 7938
||||| | | | | ||||| || | || |||| | ||| | || || | ||
Sbjct 24905 GACCTTGAATGGGAAGTGCTTCATGTCCGCCTGAACCTCTGCGTCGGCGAATTTACGACC 24964
Query 7939 GATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGC 7998
||| |||||||| ||||| || ||||||||| ||||||||||||| ||||||||| ||
Sbjct 24965 GATCAGACGCTTAGCATCGAAGACTGTGTTTGTGGGGTTCATGGCGACTTGGTTCTTTGC 25024
Query 7999 CGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCG 8058
|| || ||||| ||||| || | || || || || ||| |||| || || |||||
Sbjct 25025 GGCATCTCCGATCAGACGCTC---GGTGTCTGTGAAGGCAACGAACGAAGGAGTTGTTCG 25081
Query 8059 ATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGA 8118
|| ||||||||||| || |||||||| | | ||| | | ||| || || || ||
Sbjct 25082 GTTTCCTTGGTCGTTGGCGATAATTTCGATTCTGTCATCACGGAAGATACCCACACAGGA 25141
Query 8119 ATACGTTGTTCCTAAATCAATACCGAT 8145
|| || || || ||||||||||||||
Sbjct 25142 GTAGGTGGTACCCAAATCAATACCGAT 25168
Score = 172 bits (190), Expect = 7e-38
Identities = 545/839 (65%), Gaps = 27/839 (3%)
Strand=Plus/Plus
Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGAC--CATCTTTTCAATGTCTTCTTTCG 6626
||||| ||| | || ||||| || || || |||| ||| |||||||| || || |
Sbjct 23198 TCATCATCAGCCTTGTACTTCTCAGCCTC--GGACAACATGCGCTCAATGTCCTCCTTGG 23255
Query 6627 ATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686
| || | ||||| || || || || |||||| | ||| || || | | |||| ||
Sbjct 23256 ACAAACGGCCCTTGTCGTTGGTGATGACAATCTTGTTGGACTTTCCGGTGCCCTTCTCGA 23315
Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746
| || || |||| ||||| || ||||||| ||||| | || | |||||||||
Sbjct 23316 CGGCGGAGACGTTCATGATACCGTTGGCATCAATGTCGAAGGTGACCTCAATTTGTGGGA 23375
Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806
||| | || || | ||| || || || | || || | || || | | |||| |||
Sbjct 23376 CACCGCGAGGAGCAGGTGGGATGCCGGTAAGCTCGAACTTTCCGAGAAGATTGTTGTCCT 23435
Query 6807 T----CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCT 6862
| || |||| ||||| ||| | || | ||| ||| ||||||| || ||
Sbjct 23436 TAGTACGAGTTCTC----TCACCCTCAAACACCTGAATAAGCACACCAGGTTGGTTGTCG 23491
Query 6863 TGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACC 6922
|| ||||||| || | ||||| | ||| || || || || | |||||| |
Sbjct 23492 GAGAAGGTAGAGAAGACTTCTGACTTCTTGGTTGGGATGGTGGTGTTGCGGTGAATAAGC 23551
Query 6923 GGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGT 6982
|||||| ||||| ||| |||| || ||||||| || | ||||| | ||
Sbjct 23552 TTGGTCATTTGTCCACCAGCAGTCTCGATACCCAGAGACAATGGCGCGACGTCGAGAAGA 23611
Query 6983 AACAGGTCTT----GAACA--GATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACC 7036
| | || | | || ||| | | ||||| | | ||| || || |||||
Sbjct 23612 AGAATTTCGTTGGTGGACTTGGATGAGGTG---TCACCAGAGAGGATAGCAGCCTGGACA 23668
Query 7037 GTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTA 7096
| || |||||||| || |||||||||||||| || | || || | || || |||||
Sbjct 23669 GCAGCACCGTATGCAACAGCCTCATCGGGGTTGATGGACTTGTTTGGCTCCTTGCCGTTG 23728
Query 7097 AAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACG 7156
|| || || | | | | || || ||||| || || || ||||||||||| |||
Sbjct 23729 AAGTAGTCGGTGATGAGCTTCTGGATACGTGGGATACGGGTAGAACCACCGACCAAGACG 23788
Query 7157 ATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTT-- 7214
|| || | ||| | ||||| |||||||| | ||| || || || || |
Sbjct 23789 ATCTCGTGAACTCTGGATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCAACTGGGTTG 23848
Query 7215 -CCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGAT 7273
|| || ||||| | ||| || || ||||| ||||| ||||| || |||||
Sbjct 23849 GTGGTAGAT---CGGAAGAGATCCTGGCAAAGCTCCTCGAAACGGGCACGAGTGATGGAA 23905
Query 7274 GTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAA 7333
|| ||||| |||| || ||| | | || |||||||| |||| || || || | |||
Sbjct 23906 GTGTAGAAGTCAATACCCTCGAAGAGAGAGTCAATTTCGATGGAGGTCTGGGCGGAGGAA 23965
Query 7334 GATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTT 7392
|| || || ||||| || ||||| || || || || | |||||| || ||||| | |||
Sbjct 23966 GACAAGGTACGCTTAGCACGCTCGCATGCAGTGCGGAGACGACGGAGAGCACGAGCGTT 24024
>seq3366
Length=31922
Score = 141 bits (156), Expect = 1e-28
Identities = 248/359 (69%), Gaps = 13/359 (4%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
|||||||||||| || |||||||| || || || ||||| | || || || | ||
Sbjct 30005 ATCGAAATCTTCTCCTCCCAAGTGAGTGTCACCGGCGGTAGAAAGAACCTCGAAAACGCC 29946
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGAG 7572
| ||||| | | |||||||| || || || ||||| || || | |||||
Sbjct 29945 ACGGTCAATAGAGAGAAGGGAAACATCGAAAGTTCCTCCACCAAGATCGTAGACAATGAT 29886
Query 7573 T--ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630
| |||||| || | | |||| || | |||||| |||||||| || || ||
Sbjct 29885 TTGACGTTC---TC-----CCTCAGTCTTGTCCAAACCGTAGGCGATAGCTGCGGCGGTG 29834
Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690
||||| || | |||||||| | || || |||||||| | || ||||| || ||
Sbjct 29833 GGTTCGTTGACGATACGAAGGACTTCCAAACCGGCAATAGTACCGGCGTCTTTGGTTGCC 29774
Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750
|||| ||| ||||| |||||||||||||| || || || |||| ||||| |||||
Sbjct 29773 TGTCTTTGGTTGTCGTTGAAGTAGGCCGGGACTGTAACAACAGCGTGGGTGACCTTCTTT 29714
Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809
|| | || ||||| |||| || |||||||| ||||| ||| | || ||||||||
Sbjct 29713 CCCAAGTATGATTCGGCGACTTCCTTCATTTTACCAAGAATCATGGCGGAGATCTCTTC 29655
>seq3536
Length=11727
Score = 107 bits (118), Expect = 2e-18
Identities = 230/338 (68%), Gaps = 13/338 (4%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
|||||| |||||||| |||||||| || || || ||| | ||||| || || | |||
Sbjct 7669 ATCGAAGTCTTCACCTCCCAAGTGGGTGTCACCATTGGTGGACTTGACCTCGAAAACACC 7610
Query 7516 TCCTTCAATGTTTAACAAC-GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574
|| || || || ||| || | ||| || || || ||||||| || | | | |
Sbjct 7609 CTTTTGGAT-TTCAAGAACAGAGATATCGAAGGTTCCTCCACCCAAATCGTATACGGCAA 7551
Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634
|| |||| |||||||| | |||| ||||| |||| || || || |||||||
Sbjct 7550 TAATCTTATCCTCGTCTTTCT------CGAGGCCGTAGGCGAGTGCGGCAGCAGTTGGTT 7497
Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC--GCATCTTTCGTCGCTTG 7692
| || | | | ||| ||||| ||||| || ||| | ||||||||||| |||||
Sbjct 7496 CGTTGACTACTCTGAGAACGTTCAAACCAGCGAT--TTGACCTGCATCTTTCGTTGCTTG 7439
Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752
||||| || ||||| ||||| ||||| || || || || || | ||| ||||
Sbjct 7438 ACGTTGTGAGTCGTTGAAGTATGCCGGAACAGTAACAACAGCATTTTGAACTGGCTTAGT 7379
Query 7753 GAGATACGATTCCGCGATATCTTTCAT-TTTGGTAAGA 7789
|||||| | || || | || ||||| ||| | ||||
Sbjct 7378 GAGATATGCCTCAGCAGTCTCCTTCATCTTTTGCAAGA 7341
>seq3845
Length=30945
Score = 89.7 bits (98), Expect = 7e-13
Identities = 141/199 (71%), Gaps = 6/199 (3%)
Strand=Plus/Plus
Query 11449 TTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAAT 11508
|| |||| ||||||||||| || || ||||| ||||| || | | | |||||||
Sbjct 8419 TTCCCAACAGCATCAATTTCGTCAATGAAGATGATACATGGAGTACTCTTTCGTGCCATG 8478
Query 11509 TCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAA---CGAT 11565
| || | |||||||||||| ||| || || || || |||||||| ||||| |||
Sbjct 8479 GCGAAAAGATCACGGACTCTGGATGCTCCAACACCGACGAACATTTCGACGAATTCCGA- 8537
Query 11566 GACCCCGAACACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGT 11625
||| | || ||||| || || || ||| || || ||| | || |||||| |||
Sbjct 8538 -ACCACTGACGCTGAA-GAATGGTACTTGAGACTCGCCAGCTGTTGCCTTTGCTAATAGT 8595
Query 11626 GTTTTACCTGTACCTGGTT 11644
|| ||||| ||||||| ||
Sbjct 8596 GTCTTACCGGTACCTGATT 8614
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635102035755000
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