Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1915 329 4e-85 seq3366 141 1e-28 seq3536 107 2e-18 seq3845 89.7 7e-13 >seq1915 Length=29644 Score = 329 bits (364), Expect = 4e-85 Identities = 525/747 (70%), Gaps = 10/747 (1%) Strand=Plus/Plus Query 7401 TATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGA 7460 || |||| || || || ||||| ||||| | |||||| || || | |||| Sbjct 24430 TAACTTTTTTGTGCTTGCGTTTGAACTCATTTACGAAGTGGTTAACAAGACGGTTGTCGA 24489 Query 7461 AATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTT 7520 | || |||||||||||||| || || || ||||| | ||||||||||||||||| | | Sbjct 24490 AGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACTTCAAAGATACCCTCCT 24549 Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCG 7580 ||||| | || | |||||||| || || || ||||| || || || ||||| ||||| Sbjct 24550 CAATGGTCAAGAGAGAAACATCGAAAGTTCCTCCACCAAGATCGAAGATGAGGACGTTTC 24609 Query 7581 TATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAA 7640 || | || ||||| || | |||||| || ||||| || || || || || || | Sbjct 24610 GCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATAGCTGCTGCGGTAGGCTCGTTGA 24669 Query 7641 TAATACGAAGACAGTTCAGGCCAGCAAT-AGTTGCC-GCATCTTTCGTCGCTTGTCGTTG 7698 | ||||| ||| ||| || ||||| || || ||| ||||||||||| ||||||| ||| Sbjct 24670 TGATACGGAGAACGTTGAGACCAGCGATCAG--GCCTGCATCTTTCGTAGCTTGTCTTTG 24727 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 |||||| | ||||| || ||||| || ||||| |||| |||| | ||| || || Sbjct 24728 CGAATCAGTGAAGTAAGCTGGGACAGTGACGACAGCGTTGTTGACAGTTCCACCAAGGTA 24787 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAA 7818 | || || | || |||| ||| | ||||| |||||||| ||||| | | || Sbjct 24788 AGCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATAGATGAAATTTCTTCTGGTGTGAA 24847 Query 7819 CTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGAT 7878 || || | || || || || || ||||| || | || || |||| |||| | ||| Sbjct 24848 TTGCTTAGCCTCGCCTTTGAACTCGACTTCGATGACTGGCTT-TCCG--GCACGGTCGAT 24904 Query 7879 AACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCC 7938 ||||| | | | | ||||| || | || |||| | ||| | || || | || Sbjct 24905 GACCTTGAATGGGAAGTGCTTCATGTCCGCCTGAACCTCTGCGTCGGCGAATTTACGACC 24964 Query 7939 GATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGC 7998 ||| |||||||| ||||| || ||||||||| ||||||||||||| ||||||||| || Sbjct 24965 GATCAGACGCTTAGCATCGAAGACTGTGTTTGTGGGGTTCATGGCGACTTGGTTCTTTGC 25024 Query 7999 CGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCG 8058 || || ||||| ||||| || | || || || || ||| |||| || || ||||| Sbjct 25025 GGCATCTCCGATCAGACGCTC---GGTGTCTGTGAAGGCAACGAACGAAGGAGTTGTTCG 25081 Query 8059 ATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGA 8118 || ||||||||||| || |||||||| | | ||| | | ||| || || || || Sbjct 25082 GTTTCCTTGGTCGTTGGCGATAATTTCGATTCTGTCATCACGGAAGATACCCACACAGGA 25141 Query 8119 ATACGTTGTTCCTAAATCAATACCGAT 8145 || || || || |||||||||||||| Sbjct 25142 GTAGGTGGTACCCAAATCAATACCGAT 25168 Score = 172 bits (190), Expect = 7e-38 Identities = 545/839 (65%), Gaps = 27/839 (3%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGAC--CATCTTTTCAATGTCTTCTTTCG 6626 ||||| ||| | || ||||| || || || |||| ||| |||||||| || || | Sbjct 23198 TCATCATCAGCCTTGTACTTCTCAGCCTC--GGACAACATGCGCTCAATGTCCTCCTTGG 23255 Query 6627 ATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 | || | ||||| || || || || |||||| | ||| || || | | |||| || Sbjct 23256 ACAAACGGCCCTTGTCGTTGGTGATGACAATCTTGTTGGACTTTCCGGTGCCCTTCTCGA 23315 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 | || || |||| ||||| || ||||||| ||||| | || | ||||||||| Sbjct 23316 CGGCGGAGACGTTCATGATACCGTTGGCATCAATGTCGAAGGTGACCTCAATTTGTGGGA 23375 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 ||| | || || | ||| || || || | || || | || || | | |||| ||| Sbjct 23376 CACCGCGAGGAGCAGGTGGGATGCCGGTAAGCTCGAACTTTCCGAGAAGATTGTTGTCCT 23435 Query 6807 T----CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCT 6862 | || |||| ||||| ||| | || | ||| ||| ||||||| || || Sbjct 23436 TAGTACGAGTTCTC----TCACCCTCAAACACCTGAATAAGCACACCAGGTTGGTTGTCG 23491 Query 6863 TGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACC 6922 || ||||||| || | ||||| | ||| || || || || | |||||| | Sbjct 23492 GAGAAGGTAGAGAAGACTTCTGACTTCTTGGTTGGGATGGTGGTGTTGCGGTGAATAAGC 23551 Query 6923 GGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGT 6982 |||||| ||||| ||| |||| || ||||||| || | ||||| | || Sbjct 23552 TTGGTCATTTGTCCACCAGCAGTCTCGATACCCAGAGACAATGGCGCGACGTCGAGAAGA 23611 Query 6983 AACAGGTCTT----GAACA--GATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACC 7036 | | || | | || ||| | | ||||| | | ||| || || ||||| Sbjct 23612 AGAATTTCGTTGGTGGACTTGGATGAGGTG---TCACCAGAGAGGATAGCAGCCTGGACA 23668 Query 7037 GTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTA 7096 | || |||||||| || |||||||||||||| || | || || | || || ||||| Sbjct 23669 GCAGCACCGTATGCAACAGCCTCATCGGGGTTGATGGACTTGTTTGGCTCCTTGCCGTTG 23728 Query 7097 AAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACG 7156 || || || | | | | || || ||||| || || || ||||||||||| ||| Sbjct 23729 AAGTAGTCGGTGATGAGCTTCTGGATACGTGGGATACGGGTAGAACCACCGACCAAGACG 23788 Query 7157 ATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTT-- 7214 || || | ||| | ||||| |||||||| | ||| || || || || | Sbjct 23789 ATCTCGTGAACTCTGGATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCAACTGGGTTG 23848 Query 7215 -CCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGAT 7273 || || ||||| | ||| || || ||||| ||||| ||||| || ||||| Sbjct 23849 GTGGTAGAT---CGGAAGAGATCCTGGCAAAGCTCCTCGAAACGGGCACGAGTGATGGAA 23905 Query 7274 GTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAA 7333 || ||||| |||| || ||| | | || |||||||| |||| || || || | ||| Sbjct 23906 GTGTAGAAGTCAATACCCTCGAAGAGAGAGTCAATTTCGATGGAGGTCTGGGCGGAGGAA 23965 Query 7334 GATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTT 7392 || || || ||||| || ||||| || || || || | |||||| || ||||| | ||| Sbjct 23966 GACAAGGTACGCTTAGCACGCTCGCATGCAGTGCGGAGACGACGGAGAGCACGAGCGTT 24024 >seq3366 Length=31922 Score = 141 bits (156), Expect = 1e-28 Identities = 248/359 (69%), Gaps = 13/359 (4%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||| || |||||||| || || || ||||| | || || || | || Sbjct 30005 ATCGAAATCTTCTCCTCCCAAGTGAGTGTCACCGGCGGTAGAAAGAACCTCGAAAACGCC 29946 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGAG 7572 | ||||| | | |||||||| || || || ||||| || || | ||||| Sbjct 29945 ACGGTCAATAGAGAGAAGGGAAACATCGAAAGTTCCTCCACCAAGATCGTAGACAATGAT 29886 Query 7573 T--ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 | |||||| || | | |||| || | |||||| |||||||| || || || Sbjct 29885 TTGACGTTC---TC-----CCTCAGTCTTGTCCAAACCGTAGGCGATAGCTGCGGCGGTG 29834 Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 ||||| || | |||||||| | || || |||||||| | || ||||| || || Sbjct 29833 GGTTCGTTGACGATACGAAGGACTTCCAAACCGGCAATAGTACCGGCGTCTTTGGTTGCC 29774 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 |||| ||| ||||| |||||||||||||| || || || |||| ||||| ||||| Sbjct 29773 TGTCTTTGGTTGTCGTTGAAGTAGGCCGGGACTGTAACAACAGCGTGGGTGACCTTCTTT 29714 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || | || ||||| |||| || |||||||| ||||| ||| | || |||||||| Sbjct 29713 CCCAAGTATGATTCGGCGACTTCCTTCATTTTACCAAGAATCATGGCGGAGATCTCTTC 29655 >seq3536 Length=11727 Score = 107 bits (118), Expect = 2e-18 Identities = 230/338 (68%), Gaps = 13/338 (4%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| |||||||| |||||||| || || || ||| | ||||| || || | ||| Sbjct 7669 ATCGAAGTCTTCACCTCCCAAGTGGGTGTCACCATTGGTGGACTTGACCTCGAAAACACC 7610 Query 7516 TCCTTCAATGTTTAACAAC-GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 || || || || ||| || | ||| || || || ||||||| || | | | | Sbjct 7609 CTTTTGGAT-TTCAAGAACAGAGATATCGAAGGTTCCTCCACCCAAATCGTATACGGCAA 7551 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 || |||| |||||||| | |||| ||||| |||| || || || ||||||| Sbjct 7550 TAATCTTATCCTCGTCTTTCT------CGAGGCCGTAGGCGAGTGCGGCAGCAGTTGGTT 7497 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC--GCATCTTTCGTCGCTTG 7692 | || | | | ||| ||||| ||||| || ||| | ||||||||||| ||||| Sbjct 7496 CGTTGACTACTCTGAGAACGTTCAAACCAGCGAT--TTGACCTGCATCTTTCGTTGCTTG 7439 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 ||||| || ||||| ||||| ||||| || || || || || | ||| |||| Sbjct 7438 ACGTTGTGAGTCGTTGAAGTATGCCGGAACAGTAACAACAGCATTTTGAACTGGCTTAGT 7379 Query 7753 GAGATACGATTCCGCGATATCTTTCAT-TTTGGTAAGA 7789 |||||| | || || | || ||||| ||| | |||| Sbjct 7378 GAGATATGCCTCAGCAGTCTCCTTCATCTTTTGCAAGA 7341 >seq3845 Length=30945 Score = 89.7 bits (98), Expect = 7e-13 Identities = 141/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 11449 TTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAAT 11508 || |||| ||||||||||| || || ||||| ||||| || | | | ||||||| Sbjct 8419 TTCCCAACAGCATCAATTTCGTCAATGAAGATGATACATGGAGTACTCTTTCGTGCCATG 8478 Query 11509 TCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAA---CGAT 11565 | || | |||||||||||| ||| || || || || |||||||| ||||| ||| Sbjct 8479 GCGAAAAGATCACGGACTCTGGATGCTCCAACACCGACGAACATTTCGACGAATTCCGA- 8537 Query 11566 GACCCCGAACACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGT 11625 ||| | || ||||| || || || ||| || || ||| | || |||||| ||| Sbjct 8538 -ACCACTGACGCTGAA-GAATGGTACTTGAGACTCGCCAGCTGTTGCCTTTGCTAATAGT 8595 Query 11626 GTTTTACCTGTACCTGGTT 11644 || ||||| ||||||| || Sbjct 8596 GTCTTACCGGTACCTGATT 8614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635102035755000