Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq68 223 4e-53 seq485 109 7e-19 >seq68 Length=8748 Score = 223 bits (246), Expect = 4e-53 Identities = 933/1452 (64%), Gaps = 37/1452 (3%) Strand=Plus/Minus Query 111556 TCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATGGAAACCCCAC 111615 |||||||||||||| | ||||| | |||| ||||| | ||| |||| Sbjct 4194 TCAAGACCCTCGAGCGATCATACCTTCTTCGACTCGATGGAAAGGTTGCAGAACGTCCAC 4135 Query 111616 AGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGG 111675 | | ||| ||||||| || || | ||||| || || || ||||| || || | | Sbjct 4134 AACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGTGCCATTG 4075 Query 111676 AGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACG 111735 |||| ||| || ||||||| | |||| |||||| | || || || ||| || Sbjct 4074 AGACCTACAACTTGATGTCCAATAAATACTTCACCCACGCCTCCCCTACACTTTTCTCCG 4015 Query 111736 CTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAA 111795 ||||||||||| | | ||| | || || ||||| |||| | ||||||||| | Sbjct 4014 CTGGTACACCACAAGCTCAACTTTCATCATGCTTCCTCATTGACATGAAGGAGGATAGTA 3955 Query 111796 TCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTA 111855 || |||| ||||||| || |||| ||||| || || || || ||||| | Sbjct 3954 TCGATGGTATTTACGATACCCTCAAGACGTGTGCTATGATTTCCAAAAACGCCGGTGGCA 3895 Query 111856 TCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGT-ATTAGAGGTACAAATGGT 111914 |||| | |||| || || | || | | || | ||| ||||| |||||| Sbjct 3894 TCGGTCTCAACATTCACAGAATCCGTGCTA-CTGGTGCCTACATTGCCGGTACCAATGGT 3836 Query 111915 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAC 111974 | || |||||||| | || ||||| || || || ||| || ||| | ||||| || Sbjct 3835 AACTCCAATGGTATTGTGCCTATGCTACGAGTTTTCAACAATACTGCGAGATATGTTGAC 3776 Query 111975 CAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028 || | ||| ||||| | || | ||| |||| |||||||| |||||||| Sbjct 3775 CAGGGTGGAAACAAGCGTCCTGGTGCATTT---GCAATCTACCTTGAGCCTTGGCACGCA 3719 Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088 || | | ||||| || || | || ||||| ||| | || || | || ||| Sbjct 3718 GACGTTTTCGAGTTTCTGGACCTCCGAAAGAACCACGGTAAGGAAGAAGTCCGCGCCCGT 3659 Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 |||||||||| |||| | |||||||| |||||||| |||||| | || || ||| || Sbjct 3658 GATCTCTTCTACGCTTTGTGGATTCCGGATCTCTTTATGAAGCGTGTCGAAAAGAACGGA 3599 Query 112149 AATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGA 112207 | ||| | || | ||||| || || || | ||| | | |||| || || || Sbjct 3598 GACTGGACACTGATGTGTCCCAACGAATGCCCTGGGT-TGGCTGATGTATACGGCGATGA 3540 Query 112208 GTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGA--CGGTGCCA 112265 || ||||| ||||| | || ||| | ||| || | | | | || | | | | Sbjct 3539 ATTCGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAG-GTC-GCAAAACCATCAAA 3482 Query 112266 GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATG 112325 || | | ||| | | |||||| || ||||||||||||| || | |||| ||| Sbjct 3481 GCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGAAACCCATTCATG 3422 Query 112326 CTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGT 112385 |||||||| || || || || | ||||| || |||||||| | || || || Sbjct 3421 CTTTACAAGGATGCATGCAATAAGAAGAGCAACCAAAAGAACCTCGGCACCATTCGCAGC 3362 Query 112386 TCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAAC 112445 ||||| || || |||||||| | |||| | | |||||| ||| |||||| Sbjct 3361 TCCAATCTGTGCACAGAAATTGTCGAATACTCTGCACCAGATGAAGTTGCTTGCTGTAAC 3302 Query 112446 CTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT--GATTATG 112503 || ||||| || |||||||| | | |||||| || || | | | || || | Sbjct 3301 CTGGCATCCATTGCTCTCCCAACATTTGTGGA--CATGAACGAGGGAACTTACGACTTCC 3244 Query 112504 AAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAA 112563 |||| || ||||| ||||| || || | ||| | |||| | ||||| | | Sbjct 3243 AAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGGAACTTGAACAAGATCATTGACATCA 3184 Query 112564 ATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCG 112623 | | |||||||| | || | || ||| | | ||||| || || | | ||| Sbjct 3183 ACTACTACCCCGTCCAAGAAGCCAGAAAGAGCAATTTCCGTCACCGGCCTATCGCTGTCG 3124 Query 112624 GTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATTCCGACG 112680 ||||||||||||| || |||| ||| | |||| || | ||||||| || | Sbjct 3123 GTGTCCAAGGTCTTGCTGATGCTTTCTTGGCTCTTCGTTTAC---CATTTGAGTCACCTG 3067 Query 112681 AAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGA 112740 |||| ||| | |||| | | || || ||||| || || ||||| || |||| || Sbjct 3066 AAGCTAAGCACCTCAACGTTCAAATCTTCGAGACTATTTACCACGCTGCA-TTGA--CGT 3010 Query 112741 GTTCGG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 112797 ||| | || | || ||| ||| | ||||| || | || || || || | | Sbjct 3009 CTTCTGTTGAGATTGCTAAGGAGCTGGGTACCTATGAGACTTACGAAGGCTCACCTGTCT 2950 Query 112798 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG-ACTGG 112856 || |||| | ||||||| |||||||||| || | | ||| | | | | | ||||| Sbjct 2949 CAAAAGGCGAACTTCAATACGATATGTGGGGAG-TCACACCTACCGACCTTTGGGACTGG 2891 Query 112857 GAC-GCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACC 112915 || ||| | ||| || |||||| | | ||| | || |||||| | | | || || Sbjct 2890 GATAGCT-TGAAGAAATCCATCAAACAATACGGTGTCCGCAACAGTTTGCTCGTTGCCCC 2832 Query 112916 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 112975 |||||||||||| ||| | || || | ||| |||||| || || ||||| ||||| Sbjct 2831 TATGCCAACAGCCAGTACCTCTCAGATTCTCGGTTTTAATGAGTGTTTCGAACCATACAC 2772 Query 112976 GACGAACATCTA 112987 | |||||||| Sbjct 2771 ATCTAACATCTA 2760 >seq485 Length=41282 Score = 109 bits (120), Expect = 7e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 102166 |||||||| || ||| | ||||| || || |||||| | | ||| || | ||||| | Sbjct 6934 ACAGTTCCTTGCATTAAGAAGAAGGCTGACTGGGCTGTCAGATGGATTCAAGACAAAAAC 6993 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 | | |||| ||| | || || | || ||||| |||||| || || |||||| ||| Sbjct 6994 TC-TACCTTCGCTCAACGCCTAGTTGCTTTTGCTGCTGTTGAAGGAATTTTCTTCAGTGG 7052 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 || ||| | |||| | ||||||||||| || || | ||| | |||||| ||||| Sbjct 7053 ATCATTCGCCTCTATCTTCTGGCTCAAGAAACGTGGCTTGATGGCTGGTCTCACTTTCTC 7112 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| ||||| |||||||| || || ||| Sbjct 7113 CAATGAGCTCATCTCCCGTGACGAAGGTCTTCAC 7146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620712332790000