Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq68 196 6e-45 >seq68 Length=8748 Score = 196 bits (216), Expect = 6e-45 Identities = 1089/1723 (63%), Gaps = 45/1723 (3%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 |||||| || || |||||||| | ||| |||||| ||||| ||||| | | || Sbjct 2507 GTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGCGGCCATTTGAACAATTGT 2566 Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619 |||| ||| ||||| || |||||||| | |||||| ||| | ||||||| Sbjct 2567 TCGTTGGGAAATCTCCCACACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATGTTGGG 2626 Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCA----TGAGATCCTTCATCTCTTTCGACC 109675 |||||| || || || || ||| ||| || || | | |||||| | | |||| Sbjct 2627 GATGTTCTGGATTGAACC----GCCGTCAGCAATGATGCGGTTCTTCATGTTGTCTGACC 2682 Query 109676 AGAGACCGACCTTTTTGAGATCGTCAACAAG--ATGCTTGTTGACCACGACAAATTCACC 109733 | | || | | ||||| | | ||| ||| ||| || || ||||| || Sbjct 2683 ACAATCCCATGTCGACAAGATCCTTGAGAAGCCATGG--GTTAACGACTTGGAATTCCCC 2740 Query 109734 AGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCC 109793 || | || || ||||||||||| ||||| ||||||||||||||||| || Sbjct 2741 TGCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACACTCATTAAAACC 2800 Query 109794 TAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 || || || | || ||||| ||||| || || | ||| | |||||| |||| ||| Sbjct 2801 GAGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACTGTTGCGGACACC 2860 Query 109854 CTTCGTCTTTACCCGCTCACGCATTGCG-TCCCAATCATAACGACCACTAAATTTAGTCT 109912 | | ||| | | | || ||||| || || | | || | | | || Sbjct 2861 GTAT-TGTTTGATGGATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGT-GACT 2918 Query 109913 CACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCT 109972 | |||||||||| ||||||| | || | | |||| || || | | || ||| Sbjct 2919 C-----CCCACATATCGTATTGAAGTTCGCCTTTTGAGACAGGTGAGCCTTCGTAAGTCT 2973 Query 109973 CGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAG 110032 | || | ||| ||| || | ||| |||| | | ||| || || || |||| Sbjct 2974 CATAGGTACCCAGCTCCTTAGCAATCTCAACAGAAGACGTCAATGCAGCGTGGTAAATAG 3033 Query 110033 TCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCAC---AGTCGAAGGGAAGACCAC 110089 |||| || || ||| | || | | | || ||||| | || || || | || | Sbjct 3034 TCTCGAAGATTTGAACGTTGAGGTGCTTAG---CTTCAGGTGACTCAAATGGTAAACGA- 3089 Query 110090 AAAG--AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCAT 110147 | || || ||| |||| || ||||| || ||||||| | | || || || || | Sbjct 3090 AGAGCCAAGAAAG-CATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGTGACGGAA 3148 Query 110148 GTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATT 110207 || || || || |||||||| ||||| ||| |||| | || | || Sbjct 3149 ATTGCTCTTTCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTT 3208 Query 110208 CTTCGTCACAGTCTTC-GTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCT 110266 | | | || | ||| || | || || || || | | | ||| | ||| | | | Sbjct 3209 CCT-GACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTCCCTCGTTCA 3267 Query 110267 TATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGT 110326 | | ||| || | ||||||||||| || || || || || || | || ||| Sbjct 3268 TGTCCACAAATGTTGGGAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCATCTGGTG 3327 Query 110327 CGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCT 110386 | | |||||| | |||||| || |||| ||||| || |||| || | |||||| | Sbjct 3328 CAGAGTATTCGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTT 3387 Query 110387 GATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCT 110446 | || || |||||||||||||| || |||||| ||||| | || || || || | Sbjct 3388 GGTTGCTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTT 3447 Query 110447 GTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT 110506 | | || |||||||| | ||| | | ||| || ||| | | | ||||| Sbjct 3448 GAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTTTTGCGACCTCTACCTT 3507 Query 110507 CCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCT 110566 ||| ||| || | || | | || ||||| | ||||| ||||||| | |||| Sbjct 3508 CCTTCTCATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCA-ACCCA 3566 Query 110567 TCGCCTT-GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAAC 110625 || || || |||||| | || | ||| | ||| || || || | |||||| || Sbjct 3567 GGGCATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAG 3626 Query 110626 AGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGG 110685 || || |||||||||| || |||| || |||||| || | ||||| | ||| ||| Sbjct 3627 AGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGG 3686 Query 110686 TTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCG 110745 || || || |||| ||| || | | || | |||||| || || || |||| || Sbjct 3687 TTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCA 3746 Query 110746 ATGGATCCCTTACGACGA------CCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAG 110799 | | || | |||| || |||||| |||||| | || || ||||| Sbjct 3747 AATGCACC---AGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAA 3803 Query 110800 ACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTA 110859 || | |||||||| | ||| |||| ||| | |||||| ||||| ||| || | Sbjct 3804 ACTCGTAGCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCA 3863 Query 110860 TTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCA 110919 | ||||| || ||| || | | ||| || ||||| || || ||| ||| Sbjct 3864 GTAGCACGGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCA 3923 Query 110920 CAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAA 110978 ||| ||| |||| ||| | ||||||||||| || ||| |||| || |||| || || Sbjct 3924 CACGTCT-TGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAA 3982 Query 110979 GCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAAT 111038 ||| || || | |||| | || || || || ||| |||||||| | || || | Sbjct 3983 GCATGATGAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGT 4042 Query 111039 GAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTG 111098 ||| | ||||||| |||||| || || | || | ||| | |||||| Sbjct 4043 GAAGTATTTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCGTG 4102 Query 111099 AATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAAC 111158 |||||||| |||||| ||||||| ||| | ||| || ||| | ||||||||| | Sbjct 4103 AATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTTCCATCGAG 4162 Query 111159 ACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTAT 111201 || ||||||| ||| |||||||||| || |||||| Sbjct 4163 TCGAAGAAGGTATGATCGCTCGAGGGTCTTGAATCCGAAGTAT 4205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588947471475000