Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq68 196 6e-45
>seq68
Length=8748
Score = 196 bits (216), Expect = 6e-45
Identities = 1089/1723 (63%), Gaps = 45/1723 (3%)
Strand=Plus/Plus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559
|||||| || || |||||||| | ||| |||||| ||||| ||||| | | ||
Sbjct 2507 GTTCATTGATTGCGACTGATCAACGAAAGCACCACGGTCAGCGGCCATTTGAACAATTGT 2566
Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619
|||| ||| ||||| || |||||||| | |||||| ||| | |||||||
Sbjct 2567 TCGTTGGGAAATCTCCCACACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATGTTGGG 2626
Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCA----TGAGATCCTTCATCTCTTTCGACC 109675
|||||| || || || || ||| ||| || || | | |||||| | | ||||
Sbjct 2627 GATGTTCTGGATTGAACC----GCCGTCAGCAATGATGCGGTTCTTCATGTTGTCTGACC 2682
Query 109676 AGAGACCGACCTTTTTGAGATCGTCAACAAG--ATGCTTGTTGACCACGACAAATTCACC 109733
| | || | | ||||| | | ||| ||| ||| || || ||||| ||
Sbjct 2683 ACAATCCCATGTCGACAAGATCCTTGAGAAGCCATGG--GTTAACGACTTGGAATTCCCC 2740
Query 109734 AGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCC 109793
|| | || || ||||||||||| ||||| ||||||||||||||||| ||
Sbjct 2741 TGCTAAGACACGACGAGAGTAGATGTTAGATGTGTATGGTTCGAAACACTCATTAAAACC 2800
Query 109794 TAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853
|| || || | || ||||| ||||| || || | ||| | |||||| |||| |||
Sbjct 2801 GAGAATCTGAGAGGTACTGGCTGTTGGCATAGGGGCAACGAGCAAACTGTTGCGGACACC 2860
Query 109854 CTTCGTCTTTACCCGCTCACGCATTGCG-TCCCAATCATAACGACCACTAAATTTAGTCT 109912
| | ||| | | | || ||||| || || | | || | | | ||
Sbjct 2861 GTAT-TGTTTGATGGATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGT-GACT 2918
Query 109913 CACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCT 109972
| |||||||||| ||||||| | || | | |||| || || | | || |||
Sbjct 2919 C-----CCCACATATCGTATTGAAGTTCGCCTTTTGAGACAGGTGAGCCTTCGTAAGTCT 2973
Query 109973 CGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAG 110032
| || | ||| ||| || | ||| |||| | | ||| || || || ||||
Sbjct 2974 CATAGGTACCCAGCTCCTTAGCAATCTCAACAGAAGACGTCAATGCAGCGTGGTAAATAG 3033
Query 110033 TCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCAC---AGTCGAAGGGAAGACCAC 110089
|||| || || ||| | || | | | || ||||| | || || || | || |
Sbjct 3034 TCTCGAAGATTTGAACGTTGAGGTGCTTAG---CTTCAGGTGACTCAAATGGTAAACGA- 3089
Query 110090 AAAG--AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCAT 110147
| || || ||| |||| || ||||| || ||||||| | | || || || || |
Sbjct 3090 AGAGCCAAGAAAG-CATCAGCAAGACCTTGGACACCGACAGCGATAGGCCGGTGACGGAA 3148
Query 110148 GTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATT 110207
|| || || || |||||||| ||||| ||| |||| | || | ||
Sbjct 3149 ATTGCTCTTTCTGGCTTCTTGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTT 3208
Query 110208 CTTCGTCACAGTCTTC-GTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCT 110266
| | | || | ||| || | || || || || | | | ||| | ||| | | |
Sbjct 3209 CCT-GACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAGTCGTAAGTTCCCTCGTTCA 3267
Query 110267 TATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGT 110326
| | ||| || | ||||||||||| || || || || || || | || |||
Sbjct 3268 TGTCCACAAATGTTGGGAGAGCAATGGATGCCAGGTTACAGCAAGCAACTTCATCTGGTG 3327
Query 110327 CGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCT 110386
| | |||||| | |||||| || |||| ||||| || |||| || | |||||| |
Sbjct 3328 CAGAGTATTCGACAATTTCTGTGCACAGATTGGAGCTGCGAATGGTGCCGAGGTTCTTTT 3387
Query 110387 GATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCT 110446
| || || |||||||||||||| || |||||| ||||| | || || || || |
Sbjct 3388 GGTTGCTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGGTTTCCGGTCTCGGTTT 3447
Query 110447 GTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT 110506
| | || |||||||| | ||| | | ||| || ||| | | | |||||
Sbjct 3448 GAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTTTTGCGACCTCTACCTT 3507
Query 110507 CCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCT 110566
||| ||| || | || | | || ||||| | ||||| ||||||| | ||||
Sbjct 3508 CCTTCTCATAACTCTCATAGAGAGCTTCGAATTCATCGCCGTATACATCAGCCA-ACCCA 3566
Query 110567 TCGCCTT-GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAAC 110625
|| || || |||||| | || | ||| | ||| || || || | |||||| ||
Sbjct 3567 GGGCATTCGTTGGGACACATCAGTGTCCAGTCTCCGTTCTTTTCGACACGCTTCATAAAG 3626
Query 110626 AGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGG 110685
|| || |||||||||| || |||| || |||||| || | ||||| | ||| |||
Sbjct 3627 AGATCCGGAATCCACAAAGCGTAGAAGAGATCACGGGCGCGGACTTCTTCCTTACCGTGG 3686
Query 110686 TTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCG 110745
|| || || |||| ||| || | | || | |||||| || || || |||| ||
Sbjct 3687 TTCTTTCGGAGGTCCAGAAACTCGAAAACGTCTGCGTGCCAAGGCTCAAGGTAGATTGCA 3746
Query 110746 ATGGATCCCTTACGACGA------CCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAG 110799
| | || | |||| || |||||| |||||| | || || |||||
Sbjct 3747 AATGCACC---AGGACGCTTGTTTCCACCCTGGTCAACATATCTCGCAGTATTGTTGAAA 3803
Query 110800 ACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTA 110859
|| | |||||||| | ||| |||| ||| | |||||| ||||| ||| || |
Sbjct 3804 ACTCGTAGCATAGGCACAATACCATTGGAGTTACCATTGGTACCGGCAATGTAGGCACCA 3863
Query 110860 TTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCA 110919
| ||||| || ||| || | | ||| || ||||| || || ||| |||
Sbjct 3864 GTAGCACGGATTCTGTGAATGTTGAGACCGATGCCACCGGCGTTTTTGGAAATCATAGCA 3923
Query 110920 CAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAA 110978
||| ||| |||| ||| | ||||||||||| || ||| |||| || |||| || ||
Sbjct 3924 CACGTCT-TGAGGGTATCGTAAATACCATCGATACTATCCTCCTTCATGTCAATGAGGAA 3982
Query 110979 GCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAAT 111038
||| || || | |||| | || || || || ||| |||||||| | || || |
Sbjct 3983 GCATGATGAAAGTTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGGGT 4042
Query 111039 GAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTG 111098
||| | ||||||| |||||| || || | || | ||| | ||||||
Sbjct 4043 GAAGTATTTATTGGACATCAAGTTGTAGGTCTCAATGGCACTCTCGATATCGTCACCGTG 4102
Query 111099 AATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAAC 111158
|||||||| |||||| ||||||| ||| | ||| || ||| | ||||||||| |
Sbjct 4103 AATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTTCCATCGAG 4162
Query 111159 ACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTAT 111201
|| ||||||| ||| |||||||||| || ||||||
Sbjct 4163 TCGAAGAAGGTATGATCGCTCGAGGGTCTTGAATCCGAAGTAT 4205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588947471475000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |