Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq68 214 2e-50
>seq68
Length=8748
Score = 214 bits (236), Expect = 2e-50
Identities = 1151/1811 (64%), Gaps = 45/1811 (2%)
Strand=Plus/Plus
Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649
||||| |||||||| ||||||||||| ||| ||||||| || | |||||| || |
Sbjct 2415 CGGAGGTAGTACATTCCGGTCTTGAGACCTAGTTTCCAACCGGCAAAATGCATGGACGTA 2474
Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709
| |||| ||| || || || ||| || ||||| ||| ||| |||| |||
Sbjct 2475 ATCTTGCCCATGGTGGGGTCTTTCATATGAATGTTCATTGATTGCGACTGATCAACGAAA 2534
Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTGC 105767
|||||| | || ||||| | || | | ||| | || | |||||||| ||
Sbjct 2535 GCACCACGGTCAGCGGCCATTTGAACAA--TTGTTCGTTGGGAAATCTCCCACACGGTCT 2592
Query 105768 GGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCT 105827
||| || |||||| ||| |||| || | | ||| || || |||||||| || |
Sbjct 2593 TGTAAAGTGCCTTGATGTCAGCTGGAATGTTGGGGATGTTCTGGATTGAACCGCCGTCAG 2652
Query 105828 TGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGA 105887
| ||| | | |||||| | | ||||| | || || | ||||| |||| |
Sbjct 2653 CAATGATGCGGTTCTTCATGTTGTCTGACCACAATCCCATGTCGACAAGATCCTTGAGAA 2712
Query 105888 G--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGATGTTCG 105944
| ||| ||| || | || || || || | | | | ||| |||||||| |
Sbjct 2713 GCCATGG--GTTAACGACTTGGAATTCCCCTGCTAAGACACGACG-AGAGTAGATGTTAG 2769
Query 105945 TCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 106004
||||| ||||| || || |||||| ||| | || || | ||| |||||||||||
Sbjct 2770 ATGTGTATGGTTCGAAACACTCATTAAAACCGAGAATCTGAGAGGTACTGGCTGTTGGCA 2829
Query 106005 TTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACAT 106064
| || || | | | |||||| || | ||| | || |||||| || ||| | ||
Sbjct 2830 TAGGGGCAACGAGCAAACTGTTGCGGACACCGTATTGTTTGATGGATTTCTTCAAGCTAT 2889
Query 106065 CCCAGTCGTAGTTG-AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGG 106123
||||||| | | | | ||| | | || |||||||||| ||||||| | ||||
Sbjct 2890 CCCAGTCCCAAAGGTCGGTAGGTGTGA-CTCCCCACATATCGTATTGAAGTTCGCCTTTT 2948
Query 106124 GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCT 106182
|| || || || || | |||||||||| ||| | | | ||| | || ||||
Sbjct 2949 GAGACAGGTGAGCCTTCGTAAGTCTCATAGGTACCCAGCTCCTTAGCAATCTCAACAGAA 3008
Query 106183 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 106242
| || | | | ||||| || || || || ||||| || | || | | ||| |||||
Sbjct 3009 GACGTCAATGCA-GCGTGGTAAATAGTCTCGAAGATTTGAACGTTGAGGTGCTTAGCTTC 3067
Query 106243 ATCTGAATCAAATGCGTAGCGGCACA--AAATAAATACATCCGCGAGACCTTGAACACCC 106300
| ||| ||||||| ||| | | | || ||| |||| || |||||||| |||||
Sbjct 3068 AGGTGACTCAAATG-GTAAACGAAGAGCCAAGAAA-GCATCAGCAAGACCTTGGACACCG 3125
Query 106301 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 106360
| | | ||||| | ||| || | ||| ||||| || | ||||| || | ||
Sbjct 3126 ACAGCGATAGGCCGGTGACGGAAATTGCTCTTTCTGGCTTCTTGGACGGGGTAGTAGTTG 3185
Query 106361 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 106420
||||||||| ||| | || || ||| | | || | || ||||| ||||
Sbjct 3186 ATGTCAATGATCTTGTTCAAGTTCCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGG 3245
Query 106421 TAATCAAAAGTGCGAGTCTC-TTCA--TTGACATACTTTGGAAGGGCGATTGATGCCAAA 106477
| || |||| | ||| |||| | ||| | |||| || || || |||||||
Sbjct 3246 AAGTCGTAAGTTC---CCTCGTTCATGTCCACAAATGTTGGGAGAGCAATGGATGCCAGG 3302
Query 106478 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAA 106537
|| || ||| ||||| | | ||| || | ||||||||| |||| |||||
Sbjct 3303 TTACAGCAAGCAACTTCATCTGGTGCAGAGTATTCGACAATTTCTGTGCACAGATTGGAG 3362
Query 106538 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGC 106597
|| ||| || || | ||||||||||| ||||| || ||||| ||||||||||| |||
Sbjct 3363 CTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTATTGCATGCATCCTTGTAAAGC 3422
Query 106598 ATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCT 106657
||| | || | || ||||| || || | || |||||| | | ||| | | |||
Sbjct 3423 ATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGC- 3481
Query 106658 GGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAAC 106714
| |||| ||| | | || ||| ||| || | ||||| ||||| ||
Sbjct 3482 --TTTGATGGTTTTGCGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCGAAT 3539
Query 106715 TCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTG 106773
|| || || | || | | ||| | || || || ||||| | || | ||| |
Sbjct 3540 TCATCGCCGTATACATCAGCCA-ACCCAGGGCATTCGTTGGGACACATCAGTGTCCAGTC 3598
Query 106774 ACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATC 106833
|| || || || |||||||| || || || |||||||||| | | ||||||||
Sbjct 3599 TCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAATCCACAAAGCGTAGAAGAGATC 3658
Query 106834 TCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATC 106893
| || | ||||| | ||| ||||| ||| | || || ||||| | | ||
Sbjct 3659 ACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTC 3718
Query 106894 CGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTG 106947
|||||||| |||||||| |||| ||| | || | ||||| ||| | ||
Sbjct 3719 TGCGTGCCAAGGCTCAAGGTAGATTGC---AAATGCACCAGGACGCTTGTTTCCACCCTG 3775
Query 106948 ATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTG 107007
| ||||| | ||| || ||| || || || ||||| || | |||||||| || |
Sbjct 3776 GTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCATAGGCACAATACCATTGGAGTT 3835
Query 107008 ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAAT 107067
|||||| || || ||| | | | || | | || |||| | || ||
Sbjct 3836 ACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGATTCTGTGAATGTTGAGACCGAT 3895
Query 107068 ACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGAT 107127
|| || || || || || |||||| | | || || | || ||||| | |||
Sbjct 3896 GCCACCGGCGTTTTTGGAAATCATAGCACACGTCTTGAGGGTATCGTAAATACCATCGAT 3955
Query 107128 TGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGC 107187
|||||||| || | || |||||||| || | || | | ||||||||||||
Sbjct 3956 ACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAAAGTTGAGCTTGTGGTGTACCAGC 4015
Query 107188 ATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCT 107246
||| || || || | ||||| |||| || | | ||||||| || ||| ||||
Sbjct 4016 GGAGAAAAGTGTAGGGGAGGCGTGGGTGAA-GTATTTATTGGACATCAAGTTGTAGGTCT 4074
Query 107247 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATT 107306
| | | || || || || || ||||| || || | ||| |||||||| | ||| | ||
Sbjct 4075 CAATGGCACTCTCGATATCGTCACCGTGAATACCAACGGCAACACGCATGATCATTTGTT 4134
Query 107307 GGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTG 107365
| || ||| | | |||||||| || |||| || | || ||| ||||| |||
Sbjct 4135 GTGGACGTTCTGCAACCTTTCCATCGAGTCGAAGAAGGTATGATC-GCTCGAGGGTCTTG 4193
Query 107366 AGACCAAAGTA 107376
| || |||||
Sbjct 4194 AATCCGAAGTA 4204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589952222805000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |