Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq68 214 2e-50 >seq68 Length=8748 Score = 214 bits (236), Expect = 2e-50 Identities = 1151/1811 (64%), Gaps = 45/1811 (2%) Strand=Plus/Plus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 ||||| |||||||| ||||||||||| ||| ||||||| || | |||||| || | Sbjct 2415 CGGAGGTAGTACATTCCGGTCTTGAGACCTAGTTTCCAACCGGCAAAATGCATGGACGTA 2474 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709 | |||| ||| || || || ||| || ||||| ||| ||| |||| ||| Sbjct 2475 ATCTTGCCCATGGTGGGGTCTTTCATATGAATGTTCATTGATTGCGACTGATCAACGAAA 2534 Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTGC 105767 |||||| | || ||||| | || | | ||| | || | |||||||| || Sbjct 2535 GCACCACGGTCAGCGGCCATTTGAACAA--TTGTTCGTTGGGAAATCTCCCACACGGTCT 2592 Query 105768 GGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCT 105827 ||| || |||||| ||| |||| || | | ||| || || |||||||| || | Sbjct 2593 TGTAAAGTGCCTTGATGTCAGCTGGAATGTTGGGGATGTTCTGGATTGAACCGCCGTCAG 2652 Query 105828 TGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGA 105887 | ||| | | |||||| | | ||||| | || || | ||||| |||| | Sbjct 2653 CAATGATGCGGTTCTTCATGTTGTCTGACCACAATCCCATGTCGACAAGATCCTTGAGAA 2712 Query 105888 G--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGATGTTCG 105944 | ||| ||| || | || || || || | | | | ||| |||||||| | Sbjct 2713 GCCATGG--GTTAACGACTTGGAATTCCCCTGCTAAGACACGACG-AGAGTAGATGTTAG 2769 Query 105945 TCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 106004 ||||| ||||| || || |||||| ||| | || || | ||| ||||||||||| Sbjct 2770 ATGTGTATGGTTCGAAACACTCATTAAAACCGAGAATCTGAGAGGTACTGGCTGTTGGCA 2829 Query 106005 TTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACAT 106064 | || || | | | |||||| || | ||| | || |||||| || ||| | || Sbjct 2830 TAGGGGCAACGAGCAAACTGTTGCGGACACCGTATTGTTTGATGGATTTCTTCAAGCTAT 2889 Query 106065 CCCAGTCGTAGTTG-AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGG 106123 ||||||| | | | | ||| | | || |||||||||| ||||||| | |||| Sbjct 2890 CCCAGTCCCAAAGGTCGGTAGGTGTGA-CTCCCCACATATCGTATTGAAGTTCGCCTTTT 2948 Query 106124 GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCT 106182 || || || || || | |||||||||| ||| | | | ||| | || |||| Sbjct 2949 GAGACAGGTGAGCCTTCGTAAGTCTCATAGGTACCCAGCTCCTTAGCAATCTCAACAGAA 3008 Query 106183 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 106242 | || | | | ||||| || || || || ||||| || | || | | ||| ||||| Sbjct 3009 GACGTCAATGCA-GCGTGGTAAATAGTCTCGAAGATTTGAACGTTGAGGTGCTTAGCTTC 3067 Query 106243 ATCTGAATCAAATGCGTAGCGGCACA--AAATAAATACATCCGCGAGACCTTGAACACCC 106300 | ||| ||||||| ||| | | | || ||| |||| || |||||||| ||||| Sbjct 3068 AGGTGACTCAAATG-GTAAACGAAGAGCCAAGAAA-GCATCAGCAAGACCTTGGACACCG 3125 Query 106301 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 106360 | | | ||||| | ||| || | ||| ||||| || | ||||| || | || Sbjct 3126 ACAGCGATAGGCCGGTGACGGAAATTGCTCTTTCTGGCTTCTTGGACGGGGTAGTAGTTG 3185 Query 106361 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 106420 ||||||||| ||| | || || ||| | | || | || ||||| |||| Sbjct 3186 ATGTCAATGATCTTGTTCAAGTTCCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGG 3245 Query 106421 TAATCAAAAGTGCGAGTCTC-TTCA--TTGACATACTTTGGAAGGGCGATTGATGCCAAA 106477 | || |||| | ||| |||| | ||| | |||| || || || ||||||| Sbjct 3246 AAGTCGTAAGTTC---CCTCGTTCATGTCCACAAATGTTGGGAGAGCAATGGATGCCAGG 3302 Query 106478 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAA 106537 || || ||| ||||| | | ||| || | ||||||||| |||| ||||| Sbjct 3303 TTACAGCAAGCAACTTCATCTGGTGCAGAGTATTCGACAATTTCTGTGCACAGATTGGAG 3362 Query 106538 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGC 106597 || ||| || || | ||||||||||| ||||| || ||||| ||||||||||| ||| Sbjct 3363 CTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTATTGCATGCATCCTTGTAAAGC 3422 Query 106598 ATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCT 106657 ||| | || | || ||||| || || | || |||||| | | ||| | | ||| Sbjct 3423 ATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGC- 3481 Query 106658 GGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAAC 106714 | |||| ||| | | || ||| ||| || | ||||| ||||| || Sbjct 3482 --TTTGATGGTTTTGCGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCGAAT 3539 Query 106715 TCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTG 106773 || || || | || | | ||| | || || || ||||| | || | ||| | Sbjct 3540 TCATCGCCGTATACATCAGCCA-ACCCAGGGCATTCGTTGGGACACATCAGTGTCCAGTC 3598 Query 106774 ACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATC 106833 || || || || |||||||| || || || |||||||||| | | |||||||| Sbjct 3599 TCCGTTCTTTTCGACACGCTTCATAAAGAGATCCGGAATCCACAAAGCGTAGAAGAGATC 3658 Query 106834 TCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATC 106893 | || | ||||| | ||| ||||| ||| | || || ||||| | | || Sbjct 3659 ACGGGCGCGGACTTCTTCCTTACCGTGGTTCTTTCGGAGGTCCAGAAACTCGAAAACGTC 3718 Query 106894 CGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTG 106947 |||||||| |||||||| |||| ||| | || | ||||| ||| | || Sbjct 3719 TGCGTGCCAAGGCTCAAGGTAGATTGC---AAATGCACCAGGACGCTTGTTTCCACCCTG 3775 Query 106948 ATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTG 107007 | ||||| | ||| || ||| || || || ||||| || | |||||||| || | Sbjct 3776 GTCAACATATCTCGCAGTATTGTTGAAAACTCGTAGCATAGGCACAATACCATTGGAGTT 3835 Query 107008 ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAAT 107067 |||||| || || ||| | | | || | | || |||| | || || Sbjct 3836 ACCATTGGTACCGGCAATGTAGGCACCAGTAGCACGGATTCTGTGAATGTTGAGACCGAT 3895 Query 107068 ACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGAT 107127 || || || || || || |||||| | | || || | || ||||| | ||| Sbjct 3896 GCCACCGGCGTTTTTGGAAATCATAGCACACGTCTTGAGGGTATCGTAAATACCATCGAT 3955 Query 107128 TGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGC 107187 |||||||| || | || |||||||| || | || | | |||||||||||| Sbjct 3956 ACTATCCTCCTTCATGTCAATGAGGAAGCATGATGAAAGTTGAGCTTGTGGTGTACCAGC 4015 Query 107188 ATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCT 107246 ||| || || || | ||||| |||| || | | ||||||| || ||| |||| Sbjct 4016 GGAGAAAAGTGTAGGGGAGGCGTGGGTGAA-GTATTTATTGGACATCAAGTTGTAGGTCT 4074 Query 107247 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATT 107306 | | | || || || || || ||||| || || | ||| |||||||| | ||| | || Sbjct 4075 CAATGGCACTCTCGATATCGTCACCGTGAATACCAACGGCAACACGCATGATCATTTGTT 4134 Query 107307 GGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTG 107365 | || ||| | | |||||||| || |||| || | || ||| ||||| ||| Sbjct 4135 GTGGACGTTCTGCAACCTTTCCATCGAGTCGAAGAAGGTATGATC-GCTCGAGGGTCTTG 4193 Query 107366 AGACCAAAGTA 107376 | || ||||| Sbjct 4194 AATCCGAAGTA 4204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589952222805000