Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq730 136 5e-27
>seq730
Length=11531
Score = 136 bits (150), Expect = 5e-27
Identities = 192/268 (72%), Gaps = 4/268 (1%)
Strand=Plus/Minus
Query 153774 TTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAG 153833
|||||| ||||| | |||||||| ||||| |||||||| |||||||| | || |||
Sbjct 8871 TTTGGTGTTCCTTTCGGATATGGTGGTCCCCATGCTGCTTTCTTTGCGGTTAGCGAAAAG 8812
Query 153834 TATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTC--AGTAGATAGTGAAGGTAATA 153891
|| ||| ||||||| || || | | | || || || | | | || || | |
Sbjct 8811 TACAAGCGAAAGATTCCCGGACGTCTCATTGGCGTATCGAAGGACAGATTG--GGCGACA 8754
Query 153892 AAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCA 153951
|||| ||||| || ||||||| |||||||| || ||| | ||||| || || || |
Sbjct 8753 AAGCTATGAGATTGGCTTTACAGACCAGAGAGCAACACATCCGAAGAGAGAAGGCTACTA 8694
Query 153952 GTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATC 154011
|||| | ||||||||||| ||| |||||||||||||| | ||||||||| | ||||
Sbjct 8693 GTAATGTTTGCACAGCTCAAGCATTGCTGGCTAATATGAGCGCATTCTATGCTGTCTATC 8634
Query 154012 ATGGTGCAGATGGACTACATGCTATAGC 154039
|||| | | ||||| | ||||| ||
Sbjct 8633 ATGGGCCCCAAGGACTCAAGGCTATTGC 8606
Score = 114 bits (126), Expect = 1e-20
Identities = 264/390 (68%), Gaps = 11/390 (3%)
Strand=Plus/Minus
Query 154723 TGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAG 154782
|||| |||| || || ||||| || |||||||| |||| ||||||||| ||| ||
Sbjct 7859 TGATTCCAGTCTCCGCTCATGGTACCAATCCTGCATCGGCTGCCATGGCAGGCATGCGAG 7800
Query 154783 TTGTAGGTGTCAAGTGTGATGATGA----TGGTAACATAGACATCAAAGATCTAGAGAAG 154838
| || |||||||||||| || | |||||| | ||||| ||| || || |
Sbjct 7799 TCGTCACAGTCAAGTGTGAT-ATCAAGTCTGGTAATCTCGACATGGCAGA-CTTGAAAGC 7742
Query 154839 AAAGCAATCATGAATACATTT--GAACTGTCATGTATTATGATTACATACCCATCTACAC 154896
||| | | |||||| | || ||| | |||||||| ||||| ||| |||
Sbjct 7741 CAAGTG-TGAGAAATACAGTGAGGAGCTGGGAGCCATTATGATCACATATCCAAGCACAT 7683
Query 154897 ATGGTGTATTTGAAACTAACATTA-GACAGATATGTAAGATCGTTCATGACAATGGTGGT 154955
||||| || ||| | | || | | | | | ||| | || |||||| | | || |||
Sbjct 7682 TCGGTGTGTTCGAACCAGAGATCAAGGCTGCT-TGTGATATTGTTCATCAGCACGGCGGT 7624
Query 154956 CAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAG 155015
|| || || | || || || ||| | ||||| || | ||| | ||| |||||
Sbjct 7623 CAAGTCTACATGGACGGGGCCAATATGAATGCTCAAATTGGATTGTGTTCACCTGGTGAG 7564
Query 155016 TATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGT 155075
|||||| ||||| || ||||| || | || || |||||||||||||| ||||| ||
Sbjct 7563 ATTGGTGCTGATGTTTGCCATCTCAATCTTCACAAGACATTCTGTATTCCGCATGGTGGC 7504
Query 155076 GGAGGTCCTGGCGTAGGTCCTATAGGTGTA 155105
||||| || || || || || || ||||||
Sbjct 7503 GGAGGACCAGGTGTTGGACCAATCGGTGTA 7474
Score = 102 bits (112), Expect = 9e-17
Identities = 134/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 153243 GTCATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAA 153302
||||| || ||||||| || ||| ||| ||||||||||| |||||| || || |||
Sbjct 9429 GTCATTAAGAGAAACGTGCTGGAGGGCCCTGGTTGGTACACAAGTTACACACCATACCAA 9370
Query 153303 GCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAA 153362
||||||| ||| ||||| ||||| ||||||| || ||||| || ||| || | ||
Sbjct 9369 CCTGAGATCAGTCAAGGAAGGTTGGAGTCTTTATTGAACTACCAGACCCTCGTCTCTGAC 9310
Query 153363 CTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAA 153422
| || | | || || | || || ||||| | || ||| | |||||||| || |||
Sbjct 9309 TTGACGGCGCTTCCGATCTCCAATGCGTCTCTCCTCGACGAATCTACTGCAGCTGCCGAA 9250
Query 153423 GCAATG 153428
|| |||
Sbjct 9249 GCTATG 9244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579184744380000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |