Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq730 136 5e-27 >seq730 Length=11531 Score = 136 bits (150), Expect = 5e-27 Identities = 192/268 (72%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 153774 TTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAG 153833 |||||| ||||| | |||||||| ||||| |||||||| |||||||| | || ||| Sbjct 8871 TTTGGTGTTCCTTTCGGATATGGTGGTCCCCATGCTGCTTTCTTTGCGGTTAGCGAAAAG 8812 Query 153834 TATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTC--AGTAGATAGTGAAGGTAATA 153891 || ||| ||||||| || || | | | || || || | | | || || | | Sbjct 8811 TACAAGCGAAAGATTCCCGGACGTCTCATTGGCGTATCGAAGGACAGATTG--GGCGACA 8754 Query 153892 AAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCA 153951 |||| ||||| || ||||||| |||||||| || ||| | ||||| || || || | Sbjct 8753 AAGCTATGAGATTGGCTTTACAGACCAGAGAGCAACACATCCGAAGAGAGAAGGCTACTA 8694 Query 153952 GTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATC 154011 |||| | ||||||||||| ||| |||||||||||||| | ||||||||| | |||| Sbjct 8693 GTAATGTTTGCACAGCTCAAGCATTGCTGGCTAATATGAGCGCATTCTATGCTGTCTATC 8634 Query 154012 ATGGTGCAGATGGACTACATGCTATAGC 154039 |||| | | ||||| | ||||| || Sbjct 8633 ATGGGCCCCAAGGACTCAAGGCTATTGC 8606 Score = 114 bits (126), Expect = 1e-20 Identities = 264/390 (68%), Gaps = 11/390 (3%) Strand=Plus/Minus Query 154723 TGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAG 154782 |||| |||| || || ||||| || |||||||| |||| ||||||||| ||| || Sbjct 7859 TGATTCCAGTCTCCGCTCATGGTACCAATCCTGCATCGGCTGCCATGGCAGGCATGCGAG 7800 Query 154783 TTGTAGGTGTCAAGTGTGATGATGA----TGGTAACATAGACATCAAAGATCTAGAGAAG 154838 | || |||||||||||| || | |||||| | ||||| ||| || || | Sbjct 7799 TCGTCACAGTCAAGTGTGAT-ATCAAGTCTGGTAATCTCGACATGGCAGA-CTTGAAAGC 7742 Query 154839 AAAGCAATCATGAATACATTT--GAACTGTCATGTATTATGATTACATACCCATCTACAC 154896 ||| | | |||||| | || ||| | |||||||| ||||| ||| ||| Sbjct 7741 CAAGTG-TGAGAAATACAGTGAGGAGCTGGGAGCCATTATGATCACATATCCAAGCACAT 7683 Query 154897 ATGGTGTATTTGAAACTAACATTA-GACAGATATGTAAGATCGTTCATGACAATGGTGGT 154955 ||||| || ||| | | || | | | | | ||| | || |||||| | | || ||| Sbjct 7682 TCGGTGTGTTCGAACCAGAGATCAAGGCTGCT-TGTGATATTGTTCATCAGCACGGCGGT 7624 Query 154956 CAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAG 155015 || || || | || || || ||| | ||||| || | ||| | ||| ||||| Sbjct 7623 CAAGTCTACATGGACGGGGCCAATATGAATGCTCAAATTGGATTGTGTTCACCTGGTGAG 7564 Query 155016 TATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGT 155075 |||||| ||||| || ||||| || | || || |||||||||||||| ||||| || Sbjct 7563 ATTGGTGCTGATGTTTGCCATCTCAATCTTCACAAGACATTCTGTATTCCGCATGGTGGC 7504 Query 155076 GGAGGTCCTGGCGTAGGTCCTATAGGTGTA 155105 ||||| || || || || || || |||||| Sbjct 7503 GGAGGACCAGGTGTTGGACCAATCGGTGTA 7474 Score = 102 bits (112), Expect = 9e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 153243 GTCATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAA 153302 ||||| || ||||||| || ||| ||| ||||||||||| |||||| || || ||| Sbjct 9429 GTCATTAAGAGAAACGTGCTGGAGGGCCCTGGTTGGTACACAAGTTACACACCATACCAA 9370 Query 153303 GCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAA 153362 ||||||| ||| ||||| ||||| ||||||| || ||||| || ||| || | || Sbjct 9369 CCTGAGATCAGTCAAGGAAGGTTGGAGTCTTTATTGAACTACCAGACCCTCGTCTCTGAC 9310 Query 153363 CTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAA 153422 | || | | || || | || || ||||| | || ||| | |||||||| || ||| Sbjct 9309 TTGACGGCGCTTCCGATCTCCAATGCGTCTCTCCTCGACGAATCTACTGCAGCTGCCGAA 9250 Query 153423 GCAATG 153428 || ||| Sbjct 9249 GCTATG 9244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579184744380000