Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08- 07] 3,875 sequences; 36,396,316 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq730 132 6e-26 >seq730 Length=11531 Score = 132 bits (146), Expect = 6e-26 Identities = 268/390 (69%), Gaps = 11/390 (3%) Strand=Plus/Minus Query 159398 TGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAG 159457 |||| |||| || || ||||| || ||||||||||| || | |||||||| ||| || Sbjct 7859 TGATTCCAGTCTCCGCTCATGGTACCAATCCTGCATCGGCTGCCATGGCAGGCATGCGAG 7800 Query 159458 TTGTAGGTGTCAAGTGTGATGATGA----TGGCAACATAGACATCAAAGATCTAGAGAAG 159513 | || |||||||||||| || | ||| || | ||||| ||| || || | Sbjct 7799 TCGTCACAGTCAAGTGTGAT-ATCAAGTCTGGTAATCTCGACATGGCAGA-CTTGAAAGC 7742 Query 159514 AAAGCAATCATGAATACATTT--GAACTGTCATGTATTATGATTACATATCCATCTACAC 159571 ||| | | |||||| | || ||| | |||||||| ||||||||| ||| Sbjct 7741 CAAGTG-TGAGAAATACAGTGAGGAGCTGGGAGCCATTATGATCACATATCCAAGCACAT 7683 Query 159572 ATGGTGTATTTGAAACAAACATCA-GACAGATATGTAAGATTGTTCATGAGAATGGTGGT 159630 ||||| || ||| || | |||| | | | | ||| | ||||||||| || | || ||| Sbjct 7682 TCGGTGTGTTCGAACCAGAGATCAAGGCTGCT-TGTGATATTGTTCATCAGCACGGCGGT 7624 Query 159631 CAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGAC 159690 || || || | || || || ||| | ||||| || | || | ||| |||| Sbjct 7623 CAAGTCTACATGGACGGGGCCAATATGAATGCTCAAATTGGATTGTGTTCACCTGGTGAG 7564 Query 159691 TATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGT 159750 |||||| ||||| || ||||| || | || ||||||||||||||||| ||||| || Sbjct 7563 ATTGGTGCTGATGTTTGCCATCTCAATCTTCACAAGACATTCTGTATTCCGCATGGTGGC 7504 Query 159751 GGAGGTCCTGGCGTAGGTCCTATTGGTGTA 159780 ||||| || || || || || || |||||| Sbjct 7503 GGAGGACCAGGTGTTGGACCAATCGGTGTA 7474 Score = 129 bits (142), Expect = 7e-25 Identities = 188/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 158449 TTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAG 158508 |||||| ||||| | ||||| || ||||| |||||||| |||||||| | || ||| Sbjct 8871 TTTGGTGTTCCTTTCGGATATGGTGGTCCCCATGCTGCTTTCTTTGCGGTTAGCGAAAAG 8812 Query 158509 TATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTAATAAA 158568 || ||| ||||||| || || | | | || || || || || | ||| Sbjct 8811 TACAAGCGAAAGATTCCCGGACGTCTCATTGGCGTATCGAAGGACAGATTGGGCGACAAA 8752 Query 158569 GCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGT 158628 || ||||| || ||||||| |||||||| || ||| ||||||| || || || ||| Sbjct 8751 GCTATGAGATTGGCTTTACAGACCAGAGAGCAACACATCCGAAGAGAGAAGGCTACTAGT 8692 Query 158629 AACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCAT 158688 || | |||||||| |||||| |||||||||||||| | |||||||| | |||||| Sbjct 8691 AATGTTTGCACAGCTCAAGCATTGCTGGCTAATATGAGCGCATTCTATGCTGTCTATCAT 8632 Query 158689 GGTGCAGATGGACTACATGCTATAGC 158714 || | | ||||| | ||||| || Sbjct 8631 GGGCCCCAAGGACTCAAGGCTATTGC 8606 Score = 111 bits (122), Expect = 2e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 157918 GTCATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAA 157977 ||||| || ||||||| || ||| ||| ||||||||||| |||||| || || ||| Sbjct 9429 GTCATTAAGAGAAACGTGCTGGAGGGCCCTGGTTGGTACACAAGTTACACACCATACCAA 9370 Query 157978 GCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAA 158037 ||||||| ||| ||||| ||||| ||||||| || ||||| || ||| || | || Sbjct 9369 CCTGAGATCAGTCAAGGAAGGTTGGAGTCTTTATTGAACTACCAGACCCTCGTCTCTGAC 9310 Query 158038 CTCACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAA 158097 | || | || ||||| | || || ||||| | || ||| | |||||||| || ||| Sbjct 9309 TTGACGGCGCTTCCGATCTCCAATGCGTCTCTCCTCGACGAATCTACTGCAGCTGCCGAA 9250 Query 158098 GCAATG 158103 || ||| Sbjct 9249 GCTATG 9244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588022716270000