Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242865.1_202017-08-
07] 3,875 sequences; 36,396,316 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq730 132 6e-26
>seq730
Length=11531
Score = 132 bits (146), Expect = 6e-26
Identities = 268/390 (69%), Gaps = 11/390 (3%)
Strand=Plus/Minus
Query 159398 TGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAG 159457
|||| |||| || || ||||| || ||||||||||| || | |||||||| ||| ||
Sbjct 7859 TGATTCCAGTCTCCGCTCATGGTACCAATCCTGCATCGGCTGCCATGGCAGGCATGCGAG 7800
Query 159458 TTGTAGGTGTCAAGTGTGATGATGA----TGGCAACATAGACATCAAAGATCTAGAGAAG 159513
| || |||||||||||| || | ||| || | ||||| ||| || || |
Sbjct 7799 TCGTCACAGTCAAGTGTGAT-ATCAAGTCTGGTAATCTCGACATGGCAGA-CTTGAAAGC 7742
Query 159514 AAAGCAATCATGAATACATTT--GAACTGTCATGTATTATGATTACATATCCATCTACAC 159571
||| | | |||||| | || ||| | |||||||| ||||||||| |||
Sbjct 7741 CAAGTG-TGAGAAATACAGTGAGGAGCTGGGAGCCATTATGATCACATATCCAAGCACAT 7683
Query 159572 ATGGTGTATTTGAAACAAACATCA-GACAGATATGTAAGATTGTTCATGAGAATGGTGGT 159630
||||| || ||| || | |||| | | | | ||| | ||||||||| || | || |||
Sbjct 7682 TCGGTGTGTTCGAACCAGAGATCAAGGCTGCT-TGTGATATTGTTCATCAGCACGGCGGT 7624
Query 159631 CAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGAC 159690
|| || || | || || || ||| | ||||| || | || | ||| ||||
Sbjct 7623 CAAGTCTACATGGACGGGGCCAATATGAATGCTCAAATTGGATTGTGTTCACCTGGTGAG 7564
Query 159691 TATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGT 159750
|||||| ||||| || ||||| || | || ||||||||||||||||| ||||| ||
Sbjct 7563 ATTGGTGCTGATGTTTGCCATCTCAATCTTCACAAGACATTCTGTATTCCGCATGGTGGC 7504
Query 159751 GGAGGTCCTGGCGTAGGTCCTATTGGTGTA 159780
||||| || || || || || || ||||||
Sbjct 7503 GGAGGACCAGGTGTTGGACCAATCGGTGTA 7474
Score = 129 bits (142), Expect = 7e-25
Identities = 188/266 (71%), Gaps = 0/266 (0%)
Strand=Plus/Minus
Query 158449 TTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAG 158508
|||||| ||||| | ||||| || ||||| |||||||| |||||||| | || |||
Sbjct 8871 TTTGGTGTTCCTTTCGGATATGGTGGTCCCCATGCTGCTTTCTTTGCGGTTAGCGAAAAG 8812
Query 158509 TATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTAATAAA 158568
|| ||| ||||||| || || | | | || || || || || | |||
Sbjct 8811 TACAAGCGAAAGATTCCCGGACGTCTCATTGGCGTATCGAAGGACAGATTGGGCGACAAA 8752
Query 158569 GCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGT 158628
|| ||||| || ||||||| |||||||| || ||| ||||||| || || || |||
Sbjct 8751 GCTATGAGATTGGCTTTACAGACCAGAGAGCAACACATCCGAAGAGAGAAGGCTACTAGT 8692
Query 158629 AACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCAT 158688
|| | |||||||| |||||| |||||||||||||| | |||||||| | ||||||
Sbjct 8691 AATGTTTGCACAGCTCAAGCATTGCTGGCTAATATGAGCGCATTCTATGCTGTCTATCAT 8632
Query 158689 GGTGCAGATGGACTACATGCTATAGC 158714
|| | | ||||| | ||||| ||
Sbjct 8631 GGGCCCCAAGGACTCAAGGCTATTGC 8606
Score = 111 bits (122), Expect = 2e-19
Identities = 136/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 157918 GTCATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAA 157977
||||| || ||||||| || ||| ||| ||||||||||| |||||| || || |||
Sbjct 9429 GTCATTAAGAGAAACGTGCTGGAGGGCCCTGGTTGGTACACAAGTTACACACCATACCAA 9370
Query 157978 GCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAA 158037
||||||| ||| ||||| ||||| ||||||| || ||||| || ||| || | ||
Sbjct 9369 CCTGAGATCAGTCAAGGAAGGTTGGAGTCTTTATTGAACTACCAGACCCTCGTCTCTGAC 9310
Query 158038 CTCACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAA 158097
| || | || ||||| | || || ||||| | || ||| | |||||||| || |||
Sbjct 9309 TTGACGGCGCTTCCGATCTCCAATGCGTCTCTCCTCGACGAATCTACTGCAGCTGCCGAA 9250
Query 158098 GCAATG 158103
|| |||
Sbjct 9249 GCTATG 9244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588022716270000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |